qtlcharts: Interactive Graphics for QTL Experiments

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Web-based interactive charts (using D3.js) for the analysis of experimental crosses to identify genetic loci (quantitative trait loci, QTL) contributing to variation in quantitative traits.

Author
Karl W Broman [aut, cre], Michael Bostock [ctb, cph] (d3.js library in htmlwidgets/lib, http://d3js.org), Justin Palmer [ctb, cph] (d3.tip library in htmlwidgets/lib, https://github.com/caged/d3-tip), Cynthia Brewer [cph] (ColorBrewer library in htmlwidgets/lib, http://colorbrewer2.org), Mark Harrower [cph] (ColorBrewer library in htmlwidgets/lib, http://colorbrewer2.org), The Pennsylvania State University [cph] (ColorBrewer library in htmlwidgets/lib, http://colorbrewer2.org), jQuery Foundation [cph] (jQuery library in htmlwidgets/lib, http://jquery.com), jQuery contributors [ctb] (jQuery library in htmlwidgets/lib; see https://github.com/jquery/jquery/blob/master/AUTHORS.txt), jQuery UI contributors [ctb] (jQuery UI library in htmlwidgets/lib; see http://jqueryui.com/about)
Date of publication
2016-06-28 23:43:10
Maintainer
Karl W Broman <kbroman@biostat.wisc.edu>
License
GPL-3 | file LICENSE
Version
0.7-8
URLs

View on CRAN

Man pages

cbindQTLeffects
Combine multiple runs of estQTLeffects
estQTLeffects
Calculate QTL effects at each position across the genome
geneExpr
Anonymized gene expression data
grav
Arabidopsis QTL data on gravitropism
iboxplot
Modern boxplot linked to underlying histrograms
idotplot
Interactive phenotype x genotype plot
iheatmap
Interactive heat map
iplot
Interactive scatterplot
iplotCorr
Image of correlation matrix with linked scatterplot
iplotCurves
Plot of a bunch of curves, linked to points in scatterplots
iplotMap
Interactive genetic map plot
iplotMScanone
Interactive LOD curve
iplotPXG
Interactive phenotype x genotype plot
iplotRF
Interactive plot of recombination fractions
iplotScanone
Interactive LOD curve
iplotScantwo
Interactive plot of 2d genome scan
itriplot
Interactive plot of trinomial probabilities
qtlcharts-package
R/qtlcharts: Interactive charts for QTL data
qtlcharts-shiny
Shiny bindings for R/qtlcharts widgets
qtlchartsversion
print the installed version of R/qtlcharts
scat2scat
Scatterplot driving another scatterplot
setScreenSize
Set default maximum screen size

Files in this package

qtlcharts
qtlcharts/inst
qtlcharts/inst/htmlwidgets
qtlcharts/inst/htmlwidgets/iboxplot.yaml
qtlcharts/inst/htmlwidgets/iplotScantwo.js
qtlcharts/inst/htmlwidgets/scat2scat.js
qtlcharts/inst/htmlwidgets/iplotCorr.coffee
qtlcharts/inst/htmlwidgets/itriplot.coffee
qtlcharts/inst/htmlwidgets/iplotScanone.js
qtlcharts/inst/htmlwidgets/lib
qtlcharts/inst/htmlwidgets/lib/d3-tip
qtlcharts/inst/htmlwidgets/lib/d3-tip/index-min.js
qtlcharts/inst/htmlwidgets/lib/d3-tip/ReadMe.md
qtlcharts/inst/htmlwidgets/lib/d3-tip/LICENSE
qtlcharts/inst/htmlwidgets/lib/jquery-ui
qtlcharts/inst/htmlwidgets/lib/jquery-ui/LICENSE.txt
qtlcharts/inst/htmlwidgets/lib/jquery-ui/jquery-ui.min.js
qtlcharts/inst/htmlwidgets/lib/jquery-ui/themes
qtlcharts/inst/htmlwidgets/lib/jquery-ui/themes/smoothness
qtlcharts/inst/htmlwidgets/lib/jquery-ui/themes/smoothness/theme.css
qtlcharts/inst/htmlwidgets/lib/jquery-ui/themes/smoothness/jquery-ui.min.css
qtlcharts/inst/htmlwidgets/lib/jquery-ui/themes/smoothness/images
qtlcharts/inst/htmlwidgets/lib/jquery-ui/themes/smoothness/images/ui-icons_222222_256x240.png
qtlcharts/inst/htmlwidgets/lib/jquery-ui/themes/smoothness/images/ui-bg_flat_75_ffffff_40x100.png
qtlcharts/inst/htmlwidgets/lib/jquery-ui/themes/smoothness/images/ui-bg_glass_75_dadada_1x400.png
qtlcharts/inst/htmlwidgets/lib/jquery-ui/themes/smoothness/images/animated-overlay.gif
qtlcharts/inst/htmlwidgets/lib/jquery-ui/themes/smoothness/images/ui-icons_2e83ff_256x240.png
qtlcharts/inst/htmlwidgets/lib/jquery-ui/themes/smoothness/images/ui-longname.png
qtlcharts/inst/htmlwidgets/lib/jquery-ui/themes/smoothness/images/ui-bg_glass_65_ffffff_1x400.png
qtlcharts/inst/htmlwidgets/lib/jquery-ui/themes/smoothness/images/ui-bg_flat_0_aaaaaa_40x100.png
qtlcharts/inst/htmlwidgets/lib/jquery-ui/themes/smoothness/images/ui-bg_glass_95_fef1ec_1x400.png
qtlcharts/inst/htmlwidgets/lib/jquery-ui/themes/smoothness/images/ui-icons_cd0a0a_256x240.png
qtlcharts/inst/htmlwidgets/lib/jquery-ui/themes/smoothness/images/ui-bg_glass_75_e6e6e6_1x400.png
qtlcharts/inst/htmlwidgets/lib/jquery-ui/themes/smoothness/images/ui-icons_888888_256x240.png
qtlcharts/inst/htmlwidgets/lib/jquery-ui/themes/smoothness/images/ui-icons_454545_256x240.png
qtlcharts/inst/htmlwidgets/lib/jquery-ui/themes/smoothness/images/ui-bg_glass_55_fbf9ee_1x400.png
qtlcharts/inst/htmlwidgets/lib/jquery-ui/themes/smoothness/jquery-ui.css
qtlcharts/inst/htmlwidgets/lib/jquery
qtlcharts/inst/htmlwidgets/lib/jquery/MIT-LICENSE.txt
qtlcharts/inst/htmlwidgets/lib/jquery/dist
qtlcharts/inst/htmlwidgets/lib/jquery/dist/jquery.min.js
qtlcharts/inst/htmlwidgets/lib/d3panels
qtlcharts/inst/htmlwidgets/lib/d3panels/License.md
qtlcharts/inst/htmlwidgets/lib/d3panels/ReadMe.md
qtlcharts/inst/htmlwidgets/lib/d3panels/d3panels.min.css
qtlcharts/inst/htmlwidgets/lib/d3panels/d3panels.min.js
qtlcharts/inst/htmlwidgets/lib/colorbrewer
qtlcharts/inst/htmlwidgets/lib/colorbrewer/ReadMe.md
qtlcharts/inst/htmlwidgets/lib/colorbrewer/colorbrewer.css
qtlcharts/inst/htmlwidgets/lib/colorbrewer/colorbrewer.js
qtlcharts/inst/htmlwidgets/lib/colorbrewer/LICENSE
qtlcharts/inst/htmlwidgets/lib/qtlcharts
qtlcharts/inst/htmlwidgets/lib/qtlcharts/iplotScantwo.js
qtlcharts/inst/htmlwidgets/lib/qtlcharts/scat2scat.js
qtlcharts/inst/htmlwidgets/lib/qtlcharts/iplotScanone_pxg.js
qtlcharts/inst/htmlwidgets/lib/qtlcharts/iplotMScanone_eff.coffee
qtlcharts/inst/htmlwidgets/lib/qtlcharts/iplotScanone_noeff.coffee
qtlcharts/inst/htmlwidgets/lib/qtlcharts/iplotCorr.coffee
qtlcharts/inst/htmlwidgets/lib/qtlcharts/itriplot.coffee
qtlcharts/inst/htmlwidgets/lib/qtlcharts/charts.css
qtlcharts/inst/htmlwidgets/lib/qtlcharts/iplotMScanone_noeff.js
qtlcharts/inst/htmlwidgets/lib/qtlcharts/iboxplot.coffee
qtlcharts/inst/htmlwidgets/lib/qtlcharts/iplotMap.coffee
qtlcharts/inst/htmlwidgets/lib/qtlcharts/idotplot.js
qtlcharts/inst/htmlwidgets/lib/qtlcharts/iplot.js
qtlcharts/inst/htmlwidgets/lib/qtlcharts/iplotMap.js
qtlcharts/inst/htmlwidgets/lib/qtlcharts/iplot.coffee
qtlcharts/inst/htmlwidgets/lib/qtlcharts/iplotScanone_noeff.js
qtlcharts/inst/htmlwidgets/lib/qtlcharts/iheatmap.js
qtlcharts/inst/htmlwidgets/lib/qtlcharts/iplotCorr.js
qtlcharts/inst/htmlwidgets/lib/qtlcharts/iplotRF.coffee
qtlcharts/inst/htmlwidgets/lib/qtlcharts/iplotCurves.coffee
qtlcharts/inst/htmlwidgets/lib/qtlcharts/iplotCorr_noscat.js
qtlcharts/inst/htmlwidgets/lib/qtlcharts/iplotRF.js
qtlcharts/inst/htmlwidgets/lib/qtlcharts/iplotMScanone_eff.js
qtlcharts/inst/htmlwidgets/lib/qtlcharts/iboxplot.js
qtlcharts/inst/htmlwidgets/lib/qtlcharts/itriplot.js
qtlcharts/inst/htmlwidgets/lib/qtlcharts/scat2scat.coffee
qtlcharts/inst/htmlwidgets/lib/qtlcharts/iplotScanone_ci.coffee
qtlcharts/inst/htmlwidgets/lib/qtlcharts/iplotScanone_ci.js
qtlcharts/inst/htmlwidgets/lib/qtlcharts/iplotCurves.js
qtlcharts/inst/htmlwidgets/lib/qtlcharts/iplotScantwo.coffee
qtlcharts/inst/htmlwidgets/lib/qtlcharts/iplotCorr_noscat.coffee
qtlcharts/inst/htmlwidgets/lib/qtlcharts/idotplot.coffee
qtlcharts/inst/htmlwidgets/lib/qtlcharts/iheatmap.coffee
qtlcharts/inst/htmlwidgets/lib/qtlcharts/iplotMScanone_noeff.coffee
qtlcharts/inst/htmlwidgets/lib/qtlcharts/iplotScanone_pxg.coffee
qtlcharts/inst/htmlwidgets/lib/d3
qtlcharts/inst/htmlwidgets/lib/d3/ReadMe.md
qtlcharts/inst/htmlwidgets/lib/d3/d3.min.js
qtlcharts/inst/htmlwidgets/lib/d3/LICENSE
qtlcharts/inst/htmlwidgets/iplotCorr.yaml
qtlcharts/inst/htmlwidgets/iboxplot.coffee
qtlcharts/inst/htmlwidgets/iplotMap.coffee
qtlcharts/inst/htmlwidgets/iplotScantwo.yaml
qtlcharts/inst/htmlwidgets/idotplot.js
qtlcharts/inst/htmlwidgets/iplotRF.yaml
qtlcharts/inst/htmlwidgets/iplot.js
qtlcharts/inst/htmlwidgets/iplotMap.yaml
qtlcharts/inst/htmlwidgets/iplotMScanone.js
qtlcharts/inst/htmlwidgets/iplotMScanone.coffee
qtlcharts/inst/htmlwidgets/iplotMap.js
qtlcharts/inst/htmlwidgets/iplot.coffee
qtlcharts/inst/htmlwidgets/iheatmap.js
qtlcharts/inst/htmlwidgets/iplotCorr.js
qtlcharts/inst/htmlwidgets/iplotScanone.yaml
qtlcharts/inst/htmlwidgets/iplotScanone.coffee
qtlcharts/inst/htmlwidgets/iplotRF.coffee
qtlcharts/inst/htmlwidgets/iplotCurves.coffee
qtlcharts/inst/htmlwidgets/scat2scat.yaml
qtlcharts/inst/htmlwidgets/iplotRF.js
qtlcharts/inst/htmlwidgets/iboxplot.js
qtlcharts/inst/htmlwidgets/itriplot.js
qtlcharts/inst/htmlwidgets/scat2scat.coffee
qtlcharts/inst/htmlwidgets/itriplot.yaml
qtlcharts/inst/htmlwidgets/iplotCurves.yaml
qtlcharts/inst/htmlwidgets/iplotCurves.js
qtlcharts/inst/htmlwidgets/iplotScantwo.coffee
qtlcharts/inst/htmlwidgets/idotplot.coffee
qtlcharts/inst/htmlwidgets/iheatmap.coffee
qtlcharts/inst/htmlwidgets/iheatmap.yaml
qtlcharts/inst/htmlwidgets/idotplot.yaml
qtlcharts/inst/htmlwidgets/iplotMScanone.yaml
qtlcharts/inst/htmlwidgets/iplot.yaml
qtlcharts/inst/CITATION
qtlcharts/inst/ToDo.md
qtlcharts/inst/NEWS.md
qtlcharts/inst/ReadMe.md
qtlcharts/inst/LICENSE
qtlcharts/tests
qtlcharts/tests/Rmdtest.R
qtlcharts/tests/Rmdtest
qtlcharts/tests/Rmdtest/iplotRF.Rmd
qtlcharts/tests/Rmdtest/itriplot.Rmd
qtlcharts/tests/Rmdtest/iplotCorr.Rmd
qtlcharts/tests/Rmdtest/iplotScanone.Rmd
qtlcharts/tests/Rmdtest/iheatmap.Rmd
qtlcharts/tests/Rmdtest/iplotMap.Rmd
qtlcharts/tests/Rmdtest/scat2scat.Rmd
qtlcharts/tests/Rmdtest/iplotMScanone.Rmd
qtlcharts/tests/Rmdtest/iplot.Rmd
qtlcharts/tests/Rmdtest/iplotScantwo.Rmd
qtlcharts/tests/Rmdtest/iplotCurves_justcurves.Rmd
qtlcharts/tests/Rmdtest/iplotCurves.Rmd
qtlcharts/tests/Rmdtest/iplotPXG.Rmd
qtlcharts/tests/Rmdtest/Rmdtest.Rmd
qtlcharts/tests/Rmdtest/iboxplot.Rmd
qtlcharts/tests/Rmdtest/idotplot.Rmd
qtlcharts/tests/htmltest
qtlcharts/tests/htmltest/iboxplot.R
qtlcharts/tests/htmltest/iplotMap.R
qtlcharts/tests/htmltest/iplot.R
qtlcharts/tests/htmltest/idotplot.R
qtlcharts/tests/htmltest/scat2scat.R
qtlcharts/tests/htmltest/iheatmap.R
qtlcharts/tests/htmltest/iplotScantwo.R
qtlcharts/tests/htmltest/itriplot.R
qtlcharts/tests/htmltest/iplotPXG.R
qtlcharts/tests/htmltest/iplotScanone.R
qtlcharts/tests/htmltest/iplotCurves_justcurves.R
qtlcharts/tests/htmltest/iplotCorr.R
qtlcharts/tests/htmltest/iplotCurves.R
qtlcharts/tests/htmltest/iplotMScanone.R
qtlcharts/tests/htmltest/iplotRF.R
qtlcharts/tests/htmltest.R
qtlcharts/tests/testthat.R
qtlcharts/tests/testthat
qtlcharts/tests/testthat/test-chartopts.R
qtlcharts/tests/testthat/test-group.R
qtlcharts/tests/testthat/test-qtleffects.R
qtlcharts/tests/testthat/test-util.R
qtlcharts/NAMESPACE
qtlcharts/data
qtlcharts/data/geneExpr.rda
qtlcharts/data/grav.rda
qtlcharts/R
qtlcharts/R/iboxplot.R
qtlcharts/R/convert_pxg.R
qtlcharts/R/iplotMap.R
qtlcharts/R/convert_scanone.R
qtlcharts/R/qtlcharts.R
qtlcharts/R/grav-data.R
qtlcharts/R/iplot.R
qtlcharts/R/idotplot.R
qtlcharts/R/geneExpr-data.R
qtlcharts/R/scat2scat.R
qtlcharts/R/convert4crosstab.R
qtlcharts/R/convert4iplotcorr.R
qtlcharts/R/estQTLeffects.R
qtlcharts/R/iheatmap.R
qtlcharts/R/convert4iboxplot.R
qtlcharts/R/iplotScantwo.R
qtlcharts/R/chartOpts.R
qtlcharts/R/itriplot.R
qtlcharts/R/convert_map.R
qtlcharts/R/util.R
qtlcharts/R/iplotPXG.R
qtlcharts/R/iplotScanone.R
qtlcharts/R/setScreenSize.R
qtlcharts/R/iplotCorr.R
qtlcharts/R/qtlchartsversion.R
qtlcharts/R/iplotCurves.R
qtlcharts/R/iplotMScanone.R
qtlcharts/R/iplotRF.R
qtlcharts/MD5
qtlcharts/DESCRIPTION
qtlcharts/configure
qtlcharts/man
qtlcharts/man/qtlchartsversion.Rd
qtlcharts/man/iplotMap.Rd
qtlcharts/man/iplot.Rd
qtlcharts/man/itriplot.Rd
qtlcharts/man/iplotScantwo.Rd
qtlcharts/man/iplotMScanone.Rd
qtlcharts/man/geneExpr.Rd
qtlcharts/man/iplotPXG.Rd
qtlcharts/man/cbindQTLeffects.Rd
qtlcharts/man/iplotRF.Rd
qtlcharts/man/iboxplot.Rd
qtlcharts/man/estQTLeffects.Rd
qtlcharts/man/grav.Rd
qtlcharts/man/iplotCurves.Rd
qtlcharts/man/setScreenSize.Rd
qtlcharts/man/idotplot.Rd
qtlcharts/man/scat2scat.Rd
qtlcharts/man/iplotScanone.Rd
qtlcharts/man/iplotCorr.Rd
qtlcharts/man/qtlcharts-package.Rd
qtlcharts/man/qtlcharts-shiny.Rd
qtlcharts/man/iheatmap.Rd
qtlcharts/configure.win
qtlcharts/LICENSE