qtlmt: Tools for Mapping Multiple Complex Traits

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Provides tools for joint analysis of multiple traits in a backcross (BC) or recombinant inbred lines (RIL) population. It can be used to select an optimal subset of traits for multiple-trait mapping, analyze multiple traits via the SURE model, which can associate different QTL with different traits, and perform multiple-trait composite multiple-interval mapping.

Author
Riyan Cheng <riyan.cheng@anu.edu.au>
Date of publication
2015-11-12 13:45:25
Maintainer
Riyan Cheng <riyan.cheng@anu.edu.au>
License
GPL (>= 2)
Version
0.1-4

View on CRAN

Man pages

dataSets
Data sets
gv2mpos
Miscellaneous functions
mAdd1
Add or drop all possible terms
mlogLik
Extract log-likelihood
mStep
Model selection in multivariate multiple regression
mtcmim
MTCMIM
mtcmimStep
MTCMIM model selection
sureEps
Epistasis in a SURE model
sureEst
SURE model parameter estimation
sureStep
SURE model selection
varGroups
Group variables
varSelect
Variable selection
varStep
Variable selection
varT2
Hotelling's T^2 test statistic

Files in this package

qtlmt
qtlmt/src
qtlmt/src/qtlmt.cc
qtlmt/src/qtlmt.h
qtlmt/NAMESPACE
qtlmt/data
qtlmt/data/etrait.RData
qtlmt/R
qtlmt/R/mstep.R
qtlmt/R/mtcmim.R
qtlmt/R/varSel.R
qtlmt/R/misc.R
qtlmt/R/sure.R
qtlmt/R/zzz.R
qtlmt/MD5
qtlmt/DESCRIPTION
qtlmt/ChangeLog
qtlmt/man
qtlmt/man/varGroups.Rd
qtlmt/man/mtcmim.Rd
qtlmt/man/sureStep.Rd
qtlmt/man/varStep.Rd
qtlmt/man/mlogLik.Rd
qtlmt/man/varT2.Rd
qtlmt/man/sureEst.Rd
qtlmt/man/gv2mpos.Rd
qtlmt/man/varSelect.Rd
qtlmt/man/mAdd1.Rd
qtlmt/man/sureEps.Rd
qtlmt/man/mStep.Rd
qtlmt/man/mtcmimStep.Rd
qtlmt/man/dataSets.Rd