keep_rm: Keep or remove rows and columns from data frame

In quadcleanR: Cleanup and Visualization of Quadrat Data

Keep or remove rows and columns from data frame

Description

Using a character, or part of character select rows or columns of the data frame to either keep or remove. A more customizable way to subset your data as you can keep or remove based on partial matches, or cells containing select characters.

Usage

keep_rm(
  data,
  values,
  select,
  keep = TRUE,
  drop_levels = TRUE,
  exact = TRUE,
  colname
)

Arguments

data	A data frame.
values	A vector containing the characters or parts of characters to base selection off of.
select	If select = "row", rows containing the values will be selected for either being kept, or being removed, as specified by keep. If select = "col", columns with names containing the values will either be kept or removed, as specified by keep.
keep	If keep = TRUE the presence of the values will cause the selected rows or columns to be kept. If keep = FALSE the presence of the values will cause the selected rows or columns to be removed.
drop_levels	If drop_levels = TRUE, factor levels that have been removed will be dropped. Only applicable when select = "row"
exact	If exact = TRUE only exact matches will be selected. If exact = FALSE matches will be selected if they contain the characters in the values vector and will not be limited to exact matches only.
colname	If select = "row", colname will specify the column to select rows from.

Value

A data frame containing new selection of data.

Examples

# create data frame
Sites <- as.factor(c("One", "One", "One", "Two", "Two", "Three"))
Transect <- as.factor(c("1-Deep", "1-Shallow", "2-Shallow", "1-Shallow", "1-Deep", "1-Deep"))
Acropora.sp <- c(0.1, 0.6, 0.4, 0.9, 0.2, 0.5)
Gardineroseris.sp <- c(0.4, 0.9, 0.5, 0.23, 0.5, NA)
Psammocora.sp <- c(0.9, 0.6, 0.5, 0.8, 0.1, 0.4)
Leptastrea.sp <- c(0.5, 0.7, 0.4, 0.8, 0.2, NA)
Notes <- c(NA, NA, "saw octopus", NA, "white balance corrected", NA)
coral_cover <- data.frame(Sites, Transect, Acropora.sp, Gardineroseris.sp,
                         Psammocora.sp, Leptastrea.sp, Notes)

#Removing Notes column
keep_rm(data = coral_cover, values = c("Notes") , select = "col",
   keep = FALSE, drop_levels = FALSE, exact = TRUE)

#Selecting site One and dropping extra levels
Site_One <- keep_rm(data = coral_cover, values = c("One") , select = "row",
   keep = TRUE, drop_levels = TRUE, exact = TRUE, "Sites")
levels(Site_One$Sites)

#Removing Deep sites
Shallow_Sites <- keep_rm(data = coral_cover, values = c("-Shallow") , select ="row",
   keep = FALSE, drop_levels = TRUE, exact = FALSE, "Transect")

#Selecting only species data
Species <- keep_rm(data = coral_cover, values = c(".sp") , select ="col",
   keep = TRUE, drop_levels = TRUE, exact = FALSE)

quadcleanR documentation built on Oct. 18, 2022, 1:05 a.m.