Man pages for quantable
Streamline Descriptive Analysis of Quantitative Data Matrices

altmanblandaltman-bland plot
CVcompute CV for each row in matrix
CVloggeometric coefficient of variation (CV for log transformed...
dat2Matrixconverts sparse representation to dense where row and col can...
determineCutdetermine best Accuracy cuttoff
distmydistance among matrix columns with freely choosable distance...
fisherExactget p-values using fishers exact test for count data
getBlueScalecreate blue color scale
getBlueWhiteRedcreate blue white red palette
getDivcreate divergent palette
getGreensScalecreate green color scale
getRedScalecreate red color scale
getTValuesForVolcanoget p-values of t-test values for volcano
getWRValuesForVolcanoget p-values of wilcoxon rank sum test for volcano
imageColorscaleif you need an colorscale to you imagelables use this
imageWithLabelsimage plot with labels
imageWithLabelsNoLayoutimage plot with labels
makeROCplotcreate density plots of cases and controls and ROC plot
mypairsnormal pairs plot with different pch and plus abline
onesamplegreaterTOne sample single sided t-test on matrix
pairsQQpairsplot of QQ plots
plotOneSideVolcanoPlot and filter data coming from one sample single sided...
pvalCorMatpvalues for correlation matrix -
quantableStreamline descriptive analysis of quantitative data matrices
removeNArowsRemoves rows with more than thresh NA's from matrix
robustscalerobust scaling uses median an mad instead of mean and row...
runFunrunning function (default median absolute deviation)
runrobscalerunning robust scaling of arefw
runTICscalerunning total ion count scaling (TIC)
scaleByGroupscale data given group
simpleheatmapheatmap2 facade
split2tablesplits names and creates a matrix
sumtopsums top rows of matrix uses median of row to determine row...
unpivotunpivot data matrix
uppertriangget values of upper triangle from matrix
volcanoplotvolcano plot
write.tabwrite table in tab delimited no quotes no row.names (usefull...
write.vectorwrite vectors as single column table (usefull for exporting...
quantable documentation built on May 30, 2017, 2:11 a.m.