open_in_pgs_catalog: Browse PGS Catalog entities from the PGS Catalog Web...

In quincunx: REST API Client for the 'PGS' Catalog

Browse PGS Catalog entities from the PGS Catalog Web Graphical User Interface

Description

This function launches the web browser and opens a tab for each identifier on the PGS Catalog web graphical user interface: https://www.pgscatalog.org/.

Usage

open_in_pgs_catalog(
  identifier = NULL,
  pgs_catalog_entity = c("pgs", "pgp", "pss", "efo")
)

Arguments

identifier	A vector of identifiers. The identifiers can be: PGS, PGP, PSS or EFO identifiers.
pgs_catalog_entity	Either 'pgs' (default), 'pgp', 'pss', 'efo'. This argument indicates the type of the identifiers passed in identifier.

Value

Returns TRUE if successful, or FALSE otherwise. But note that this function is run for its side effect.

Examples

# Open in PGS scores Catalog Web Graphical User Interface
open_in_pgs_catalog(c('PGS000001', 'PGS000002'))

# Open PGS Catalog Publications
open_in_pgs_catalog(c('PGP000001', 'PGP000002'),
  pgs_catalog_entity = 'pgp')

# Open Sample Sets (PSS)
open_in_pgs_catalog(c('PSS000001', 'PSS000002'),
  pgs_catalog_entity = 'pss')

# Open EFO traits (EFO)
open_in_pgs_catalog(c('EFO_0001645', 'MONDO_0007254'),
  pgs_catalog_entity = 'efo')

quincunx documentation built on June 8, 2025, 11:35 a.m.