getR: Retrieve matrix R from CURobj-class
In rCUR: CUR decomposition package
Description
Usage
Arguments
Value
References
Examples
Description
Retrieve matrix R from CURobj-class
Usage
1
getR(object)
Arguments
object
object of class CURobj-class
Value
a matrix with compontent R of CUR
References
Mahoney M. W. and Drineas P. (2009) CUR matrix decompositions for improved data analysis. PNAS, 106(3):697-702
Andras Bodor, Istvan Csabai, Michael W Mahoney and Norbert Solymosi
rCUR:an R package for CUR matrix decomposition
BMC Bioinformatics 2012, 13:103
doi:10.1186/1471-2105-13-103
Examples
1
2
3
Example output
Loading required package: MASS
Loading required package: Matrix
Loading required package: lattice
GIST GIST GIST GIST GIST GIST GIST GIST
516 -0.9972 -1.9760 -2.1630000 0.15390 -0.32450 -0.7085 -0.73660 -0.20110
857 -1.8920 -2.2480 -2.4860000 -0.55850 -2.13100 -3.4340 -2.76300 -1.52800
980 -1.2550 -0.9360 -0.8126000 -1.56000 -2.08300 -1.1600 -0.87250 -3.07500
2036 1.0360 -0.0228 0.0338000 -0.70130 -0.09490 -0.0678 -0.16654 -0.03170
2290 -0.9119 0.5926 -0.1268000 -1.74900 -0.66080 -1.6630 -1.02300 0.67280
2319 0.6203 -0.5351 -0.9497000 -0.56281 -1.14200 0.2003 -0.69030 -0.76330
2640 -1.4530 0.8387 0.3853000 -3.01000 -0.68460 0.1094 0.22918 -0.26870
2789 -2.2340 -0.8730 -0.2680556 -0.50680 0.51440 -0.0063 -0.18810 -0.33400
2840 -2.4230 -0.3801 0.0175000 0.18850 -0.31070 -0.9376 -1.00400 -0.35330
2848 -0.1040 1.6810 1.7460000 -0.55110 -0.29150 -1.1080 -0.87220 -0.00970
3630 -1.1910 -0.9415 -1.9230000 -1.18100 -0.43850 -2.5690 -0.78980 -0.18830
3714 -1.3020 -1.0590 0.5853400 0.10008 -0.01723 -0.3470 -0.74480 -0.52220
4357 1.3230 1.5330 1.9570000 0.78130 1.46600 1.2170 0.88880 1.13700
4488 1.1620 1.3530 1.6230000 0.94320 0.52837 0.6830 0.25610 -0.23810
4502 -0.1504 4.0650 2.0920100 5.34200 1.23800 2.3583 4.60700 4.71200
4913 -0.3966 0.1003 0.5943000 0.47050 -0.66290 1.2690 0.80030 0.82590
4934 -0.0460 0.1458 0.1042000 -0.04000 0.21480 1.4700 1.37000 1.48300
5296 0.4235 0.4568 0.4052900 2.21400 -0.21374 1.2510 0.53120 -0.35610
5468 -0.5222 -0.6431 -0.1679000 -0.05450 -0.26560 0.9796 1.62700 0.77819
GIST GIST LEIO LEIO LEIO LEIO LEIO LEIO
516 -0.78640 0.2464 0.5245 0.1582 -0.5348000 -0.9633 0.3771 0.1001
857 2.21900 -2.2670 -2.5210 -2.2080 -2.2480000 -2.4850 0.7485 1.6730
980 0.56870 -0.3479 -2.4530 -0.2728 -0.9490000 -1.2410 1.2500 0.8335
2036 0.10980 -0.8324 -0.0589 1.1380 -0.2144200 -0.5318 -0.4484 0.5868
2290 -4.04000 -0.8270 -1.7800 -1.1690 0.8520000 0.8742 0.8682 -0.7161
2319 -2.30500 -0.2327 0.8148 -0.6408 -0.6957000 0.7964 -0.8354 -1.2170
2640 1.46000 -0.1452 -0.4215 1.4280 1.7910000 1.2080 1.2640 1.8370
2789 -0.21530 -0.4434 0.2081 2.7200 1.4550000 1.1350 1.6340 1.3680
2840 -1.25400 -0.4461 1.5320 0.0031 1.7040000 1.8470 1.5230 1.8440
2848 -0.03500 -0.6655 0.2136 0.0360 1.4860000 1.8910 0.4348 0.5316
3630 -0.43066 0.4887 0.0873 2.7230 0.7266000 0.7457 0.1108 -0.5734
3714 0.21620 1.4890 0.0279 0.3483 -1.7170000 -1.8100 0.0860 -0.2963
4357 1.14600 0.4930 0.1164 0.6326 -0.1858000 -0.2251 -0.4878 -1.5310
4488 1.53900 -0.3902 1.3450 -0.2083 0.2444778 -0.1034 1.1150 0.3940
4502 4.16800 3.4240 -3.8870 -2.2920 -2.2250000 -3.0720 -1.2730 -2.3420
4913 0.64180 0.5360 -1.5250 1.0440 0.9617000 1.1810 -0.0014 0.4954
4934 0.95770 0.9132 -0.8399 0.7721 1.7160000 1.9870 0.4030 0.4891
5296 -4.08100 -0.4320 -0.2138 0.3346 0.2562000 0.1128 -1.9500 -1.9990
5468 2.51700 -0.0065 0.0663 0.1106 -0.2269300 -0.9074 -0.9774 -1.7490
LEIO LEIO LEIO LEIO LEIO LEIO SARC SARC
516 -1.396000 1.3530 0.68650 1.6530 1.8290 2.3500000 -2.4940 -0.3779
857 -2.335000 1.9740 0.61120 1.4680 2.1360 -0.2914000 1.7060 0.5815
980 -0.524200 1.0240 0.64000 1.2860 1.7490 2.0010000 -1.3290 1.1330
2036 -0.172400 -0.3475 -0.48720 -0.1227 0.4364 0.0291000 0.4643 -0.3654
2290 0.765300 -2.7670 1.96100 -0.6317 -0.3934 -0.2810000 0.3152 0.5211
2319 -0.273400 1.0670 0.31120 -0.1782 1.0570 0.2132500 -0.3261 0.4694
2640 1.952000 0.9547 -0.63810 1.4340 1.5210 -1.9410000 -1.3630 -1.2540
2789 1.303478 0.0541 0.64230 0.1268 -2.3860 -0.8305333 -1.8200 -1.1040
2840 0.646000 0.4725 -0.14620 0.7618 0.4322 -0.6016000 1.0520 0.0209
2848 0.849900 -0.5638 0.26890 -0.0250 -0.3973 -0.7971000 -0.8945 -0.3072
3630 2.342000 0.4036 0.04930 -0.5452 0.8651 0.1728000 -0.4499 0.5429
3714 6.332000 0.4516 0.23910 0.0116 -0.7957 1.2280000 -0.5278 -0.2029
4357 -1.071000 0.1894 0.06490 -1.3730 -0.4610 -0.8656000 -0.5732 -0.3534
4488 -0.574000 0.0121 -0.56025 -0.6305 -0.4467 -0.7181000 -0.5326 -0.9050
4502 -0.556200 -2.6910 -2.02800 -2.5160 -1.3580 -1.4939500 -0.5657 2.2480
4913 -0.433000 -0.5951 -0.12110 -1.1700 -1.9370 0.2711000 0.8146 -0.0823
4934 0.193800 -0.5791 -2.79000 0.1926 -1.2290 -0.0097000 0.3980 0.3568
5296 0.879100 1.0600 -0.52500 -0.7259 -0.2105 -0.3420100 -2.3440 -1.2710
5468 -0.343500 -0.6141 0.16387 -1.4520 -0.2881 2.6000000 0.9130 0.2073
SARC SARC SARC SARC SARC SARC SARC
516 -3.43600 -2.1350000 -1.27700 -0.8790000 -2.5140 0.159900 0.23770
857 -1.16700 -0.2516000 1.04500 0.8381000 0.7695 1.608000 1.04000
980 0.73920 1.1000000 1.72300 1.5050000 1.0260 0.700500 0.23750
2036 0.18270 0.2622000 0.30230 -0.4610000 -0.4730 2.119000 1.76700
2290 3.86200 1.7380000 1.91600 1.0390000 2.3690 1.828000 1.10900
2319 0.23390 0.5576000 0.97570 2.3100000 1.9490 -0.481100 1.01800
2640 -1.69600 1.3710000 -0.92910 -1.0030000 2.7760 0.298600 -0.26410
2789 -0.40246 -0.7031000 -0.16861 0.2655889 -1.2600 -0.749050 0.91430
2840 -0.83040 0.0824000 0.78150 0.3559000 0.1114 0.028000 0.41070
2848 0.23360 -0.1285000 -1.10100 -0.7833000 -0.5755 -0.647500 -0.58180
3630 -0.62517 -1.1030000 -1.18500 -0.2831000 0.0101 -1.758000 -1.40600
3714 0.74150 0.6293000 -0.46820 -0.2128000 0.6277 -0.252400 0.15580
4357 -0.60490 -0.7190000 -0.99090 -1.5370000 -0.0187 -1.396000 -1.40400
4488 0.86530 1.6840000 0.04510 -0.3741000 0.9899 -1.939000 -2.08700
4502 3.43400 2.4900000 1.32200 -2.1070000 1.4270 0.026850 5.07400
4913 1.30300 0.6709000 0.96320 2.4670000 0.1425 -0.519200 -0.86580
4934 0.32111 0.7802333 0.67940 1.5370000 0.1409 0.710000 1.18200
5296 5.84300 4.4300000 4.63100 0.2481000 1.4020 -0.164725 -0.01450
5468 1.47500 -1.9460000 0.01790 0.4401000 -0.5773 0.151390 -0.04288
rCUR documentation built on May 2, 2019, 2:21 a.m.
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Description Usage Arguments Value References Examples
Description
Retrieve matrix R from CURobj-class
Usage
1 | getR(object)
|
Arguments
object |
object of class CURobj-class |
Value
a matrix with compontent R of CUR
References
Mahoney M. W. and Drineas P. (2009) CUR matrix decompositions for improved data analysis. PNAS, 106(3):697-702
Andras Bodor, Istvan Csabai, Michael W Mahoney and Norbert Solymosi rCUR:an R package for CUR matrix decomposition BMC Bioinformatics 2012, 13:103 doi:10.1186/1471-2105-13-103
Examples
1 2 3 |
Example output
Loading required package: MASS
Loading required package: Matrix
Loading required package: lattice
GIST GIST GIST GIST GIST GIST GIST GIST
516 -0.9972 -1.9760 -2.1630000 0.15390 -0.32450 -0.7085 -0.73660 -0.20110
857 -1.8920 -2.2480 -2.4860000 -0.55850 -2.13100 -3.4340 -2.76300 -1.52800
980 -1.2550 -0.9360 -0.8126000 -1.56000 -2.08300 -1.1600 -0.87250 -3.07500
2036 1.0360 -0.0228 0.0338000 -0.70130 -0.09490 -0.0678 -0.16654 -0.03170
2290 -0.9119 0.5926 -0.1268000 -1.74900 -0.66080 -1.6630 -1.02300 0.67280
2319 0.6203 -0.5351 -0.9497000 -0.56281 -1.14200 0.2003 -0.69030 -0.76330
2640 -1.4530 0.8387 0.3853000 -3.01000 -0.68460 0.1094 0.22918 -0.26870
2789 -2.2340 -0.8730 -0.2680556 -0.50680 0.51440 -0.0063 -0.18810 -0.33400
2840 -2.4230 -0.3801 0.0175000 0.18850 -0.31070 -0.9376 -1.00400 -0.35330
2848 -0.1040 1.6810 1.7460000 -0.55110 -0.29150 -1.1080 -0.87220 -0.00970
3630 -1.1910 -0.9415 -1.9230000 -1.18100 -0.43850 -2.5690 -0.78980 -0.18830
3714 -1.3020 -1.0590 0.5853400 0.10008 -0.01723 -0.3470 -0.74480 -0.52220
4357 1.3230 1.5330 1.9570000 0.78130 1.46600 1.2170 0.88880 1.13700
4488 1.1620 1.3530 1.6230000 0.94320 0.52837 0.6830 0.25610 -0.23810
4502 -0.1504 4.0650 2.0920100 5.34200 1.23800 2.3583 4.60700 4.71200
4913 -0.3966 0.1003 0.5943000 0.47050 -0.66290 1.2690 0.80030 0.82590
4934 -0.0460 0.1458 0.1042000 -0.04000 0.21480 1.4700 1.37000 1.48300
5296 0.4235 0.4568 0.4052900 2.21400 -0.21374 1.2510 0.53120 -0.35610
5468 -0.5222 -0.6431 -0.1679000 -0.05450 -0.26560 0.9796 1.62700 0.77819
GIST GIST LEIO LEIO LEIO LEIO LEIO LEIO
516 -0.78640 0.2464 0.5245 0.1582 -0.5348000 -0.9633 0.3771 0.1001
857 2.21900 -2.2670 -2.5210 -2.2080 -2.2480000 -2.4850 0.7485 1.6730
980 0.56870 -0.3479 -2.4530 -0.2728 -0.9490000 -1.2410 1.2500 0.8335
2036 0.10980 -0.8324 -0.0589 1.1380 -0.2144200 -0.5318 -0.4484 0.5868
2290 -4.04000 -0.8270 -1.7800 -1.1690 0.8520000 0.8742 0.8682 -0.7161
2319 -2.30500 -0.2327 0.8148 -0.6408 -0.6957000 0.7964 -0.8354 -1.2170
2640 1.46000 -0.1452 -0.4215 1.4280 1.7910000 1.2080 1.2640 1.8370
2789 -0.21530 -0.4434 0.2081 2.7200 1.4550000 1.1350 1.6340 1.3680
2840 -1.25400 -0.4461 1.5320 0.0031 1.7040000 1.8470 1.5230 1.8440
2848 -0.03500 -0.6655 0.2136 0.0360 1.4860000 1.8910 0.4348 0.5316
3630 -0.43066 0.4887 0.0873 2.7230 0.7266000 0.7457 0.1108 -0.5734
3714 0.21620 1.4890 0.0279 0.3483 -1.7170000 -1.8100 0.0860 -0.2963
4357 1.14600 0.4930 0.1164 0.6326 -0.1858000 -0.2251 -0.4878 -1.5310
4488 1.53900 -0.3902 1.3450 -0.2083 0.2444778 -0.1034 1.1150 0.3940
4502 4.16800 3.4240 -3.8870 -2.2920 -2.2250000 -3.0720 -1.2730 -2.3420
4913 0.64180 0.5360 -1.5250 1.0440 0.9617000 1.1810 -0.0014 0.4954
4934 0.95770 0.9132 -0.8399 0.7721 1.7160000 1.9870 0.4030 0.4891
5296 -4.08100 -0.4320 -0.2138 0.3346 0.2562000 0.1128 -1.9500 -1.9990
5468 2.51700 -0.0065 0.0663 0.1106 -0.2269300 -0.9074 -0.9774 -1.7490
LEIO LEIO LEIO LEIO LEIO LEIO SARC SARC
516 -1.396000 1.3530 0.68650 1.6530 1.8290 2.3500000 -2.4940 -0.3779
857 -2.335000 1.9740 0.61120 1.4680 2.1360 -0.2914000 1.7060 0.5815
980 -0.524200 1.0240 0.64000 1.2860 1.7490 2.0010000 -1.3290 1.1330
2036 -0.172400 -0.3475 -0.48720 -0.1227 0.4364 0.0291000 0.4643 -0.3654
2290 0.765300 -2.7670 1.96100 -0.6317 -0.3934 -0.2810000 0.3152 0.5211
2319 -0.273400 1.0670 0.31120 -0.1782 1.0570 0.2132500 -0.3261 0.4694
2640 1.952000 0.9547 -0.63810 1.4340 1.5210 -1.9410000 -1.3630 -1.2540
2789 1.303478 0.0541 0.64230 0.1268 -2.3860 -0.8305333 -1.8200 -1.1040
2840 0.646000 0.4725 -0.14620 0.7618 0.4322 -0.6016000 1.0520 0.0209
2848 0.849900 -0.5638 0.26890 -0.0250 -0.3973 -0.7971000 -0.8945 -0.3072
3630 2.342000 0.4036 0.04930 -0.5452 0.8651 0.1728000 -0.4499 0.5429
3714 6.332000 0.4516 0.23910 0.0116 -0.7957 1.2280000 -0.5278 -0.2029
4357 -1.071000 0.1894 0.06490 -1.3730 -0.4610 -0.8656000 -0.5732 -0.3534
4488 -0.574000 0.0121 -0.56025 -0.6305 -0.4467 -0.7181000 -0.5326 -0.9050
4502 -0.556200 -2.6910 -2.02800 -2.5160 -1.3580 -1.4939500 -0.5657 2.2480
4913 -0.433000 -0.5951 -0.12110 -1.1700 -1.9370 0.2711000 0.8146 -0.0823
4934 0.193800 -0.5791 -2.79000 0.1926 -1.2290 -0.0097000 0.3980 0.3568
5296 0.879100 1.0600 -0.52500 -0.7259 -0.2105 -0.3420100 -2.3440 -1.2710
5468 -0.343500 -0.6141 0.16387 -1.4520 -0.2881 2.6000000 0.9130 0.2073
SARC SARC SARC SARC SARC SARC SARC
516 -3.43600 -2.1350000 -1.27700 -0.8790000 -2.5140 0.159900 0.23770
857 -1.16700 -0.2516000 1.04500 0.8381000 0.7695 1.608000 1.04000
980 0.73920 1.1000000 1.72300 1.5050000 1.0260 0.700500 0.23750
2036 0.18270 0.2622000 0.30230 -0.4610000 -0.4730 2.119000 1.76700
2290 3.86200 1.7380000 1.91600 1.0390000 2.3690 1.828000 1.10900
2319 0.23390 0.5576000 0.97570 2.3100000 1.9490 -0.481100 1.01800
2640 -1.69600 1.3710000 -0.92910 -1.0030000 2.7760 0.298600 -0.26410
2789 -0.40246 -0.7031000 -0.16861 0.2655889 -1.2600 -0.749050 0.91430
2840 -0.83040 0.0824000 0.78150 0.3559000 0.1114 0.028000 0.41070
2848 0.23360 -0.1285000 -1.10100 -0.7833000 -0.5755 -0.647500 -0.58180
3630 -0.62517 -1.1030000 -1.18500 -0.2831000 0.0101 -1.758000 -1.40600
3714 0.74150 0.6293000 -0.46820 -0.2128000 0.6277 -0.252400 0.15580
4357 -0.60490 -0.7190000 -0.99090 -1.5370000 -0.0187 -1.396000 -1.40400
4488 0.86530 1.6840000 0.04510 -0.3741000 0.9899 -1.939000 -2.08700
4502 3.43400 2.4900000 1.32200 -2.1070000 1.4270 0.026850 5.07400
4913 1.30300 0.6709000 0.96320 2.4670000 0.1425 -0.519200 -0.86580
4934 0.32111 0.7802333 0.67940 1.5370000 0.1409 0.710000 1.18200
5296 5.84300 4.4300000 4.63100 0.2481000 1.4020 -0.164725 -0.01450
5468 1.47500 -1.9460000 0.01790 0.4401000 -0.5773 0.151390 -0.04288
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