R/data.R

In rDecode: Descent-Based Calibrated Optimal Direct Estimation

#' @title Lung cancer training data set from Gordon et al. (2002)
#'
#' @name lung.train
#'
#' @description Preprocessed lung cancer training data of 1577 genes from 145 patients with lung cancer. There are 120 patients with adenocarcinoma (AD) and 25 patients with malignant pleural mesothelioma (MPM). The original data was used in Gordon et al. (2002), with this preprocessed version used in Pun and Hadimaja (2018).
#'
#' @usage data(lung.train)
#'
#' @format A data frame with 145 observations on 1577 variables.
#'
#' @source http://dx.doi.org/10.17632/ynp2tst2hh.4#file-673c9416-39ed-446d-9be9-37ac74353029
#'
#' @references
#' Gordon, G. J., Jensen, R. V., Hsiao, L. L., Gullans, S. R., Blumenstock, J. E., Ramaswamy, S., ... & Bueno, R. (2002). Translation of microarray data into clinically relevant cancer diagnostic tests using gene expression ratios in lung cancer and mesothelioma. Cancer research, 62(17), 4963-4967.
#' @docType data
#' @keywords data
NULL

#' @title Lung cancer test data set from Gordon et al. (2002)
#'
#' @name lung.test
#'
#' @description Preprocessed lung cancer test data of 1577 genes from 36 patients with lung cancer. There are 30 patients with adenocarcinoma (AD) and 6 patients with malignant pleural mesothelioma (MPM). The original data was used in Gordon et al. (2002), with this preprocessed version used in Pun and Hadimaja (2018).
#'
#' @usage data(lung.test)
#'
#' @format A data frame with 36 observations on 1577 variables.
#'
#' @source http://dx.doi.org/10.17632/ynp2tst2hh.4#file-673c9416-39ed-446d-9be9-37ac74353029
#'
#' @references
#' Gordon, G. J., Jensen, R. V., Hsiao, L. L., Gullans, S. R., Blumenstock, J. E., Ramaswamy, S., ... & Bueno, R. (2002). Translation of microarray data into clinically relevant cancer diagnostic tests using gene expression ratios in lung cancer and mesothelioma. Cancer research, 62(17), 4963-4967.
#' @docType data
#' @keywords data
NULL