rLakeAnalyzer: Lake Physics Tools
Version 1.8.3

Standardized methods for calculating common important derived physical features of lakes including water density based based on temperature, thermal layers, thermocline depth, lake number, Wedderburn number, Schmidt stability and others.

Browse man pages Browse package API and functions Browse package files

AuthorLuke Winslow, Jordan Read, Richard Woolway, Jennifer Brentrup, Taylor Leach, Jake Zwart
Date of publication2016-05-21 01:15:06
MaintainerLuke Winslow <lawinslow@gmail.com>
LicenseGPL (>= 2)
Version1.8.3
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("rLakeAnalyzer")

Man pages

buoyancy.freq: Calculates buoyancy frequency.
center.buoyancy: Calculates the center of buoyancy.
get.offsets: Gets depths from data frame containing profile info.
internal.energy: Internal energy function (Joules)
lake.number: Calculate Lake Number
lake.number.plot: Plots time series of Lake Number
layer.density: Returns the average density of a layer between two depths.
layer.temperature: Returns the average temperature of a layer between two...
load.bathy: Import lake bathmynetry data.
load.ts: Load timeseries from properly formatted text file.
meta.depths: Calculate the Top and Bottom Depths of the Metalimnion
schmidt.plot: Creates a time series plot of Schmidt's stability
schmidt.stability: Calculate the Schmidt stability
thermo.depth: Calculate depth of the thermocline from a temperature...
ts.buoyancy.freq: Calculate the buoyancy (Brunt-Vaisala) frequency for a...
ts.center.buoyancy: Calculates the center of buoyancy for multiple temperature...
ts.layer.temperature: Calculate volume-weighted average water temperature across a...
ts.meta.depths: Calculate physical indices for a timeseries.
ts.wedderburn.number: Calculate Wedderburn number for a timeseries.
uStar: Calculates the water friction velocity, uStar
water.density: Estimate Water Density
wedderburn.number: Calculates Wedderburn Number for a lake.
wtr.heat.map: Plots a heat-map of water temperature.
wtr.heatmap.layers: Plots water temperature heatmap with major limnetic layers...
wtr.lineseries: Creates a line based plot of temperature profile time series
wtr.plot.temp: Creates a time series plot of the thermocline and top and...

Functions

buoyancy.freq Man page Source code
center.buoyancy Man page Source code
drop.datetime Source code
findPeaks Source code
get.datetime Source code
get.drho_dz Source code
get.offsets Man page Source code
internal.energy Man page Source code
lake.number Man page Source code
lake.number.plot Man page Source code
layer.density Man page Source code
layer.temperature Man page Source code
load.bathy Man page Source code
load.ts Man page Source code
meta.depths Man page Source code
schmidt.plot Man page Source code
schmidt.stability Man page Source code
thermo.depth Man page Source code
ts.buoyancy.freq Man page Source code
ts.center.buoyancy Man page Source code
ts.internal.energy Man page Source code
ts.lake.number Man page Source code
ts.layer.temperature Man page Source code
ts.meta.depths Man page Source code
ts.schmidt.stability Man page Source code
ts.thermo.depth Man page Source code
ts.uStar Man page Source code
ts.wedderburn.number Man page Source code
uStar Man page Source code
water.density Man page Source code
wedderburn.number Man page Source code
wtr.heat.map Man page Source code
wtr.heatmap.layers Man page Source code
wtr.lineseries Man page Source code
wtr.plot.temp Man page Source code

Files

inst
inst/extdata
inst/extdata/Sparkling.daily.wnd
inst/extdata/Sparkling.bth
inst/extdata/Sparkling.daily.wtr
inst/extdata/sparkling.thermod.tsv
inst/extdata/Sparkling.sthermod.tsv
inst/extdata/Sparkling.wtr
inst/extdata/Sparkling.wnd
inst/doc
inst/doc/data.handling.pdf
inst/doc/data.handling.Rnw
inst/doc/data.handling.R
tests
tests/testthat.R
tests/testthat
tests/testthat/test-thermo.depth.R
NAMESPACE
R
R/helper.functions.R
R/load.data.R
R/water.density.R
R/uStar.R
R/layer.density.R
R/lake.number.R
R/meta.depths.R
R/wtr.plotting.R
R/wtr.plot.temp.R
R/schmidt.stability.R
R/wtr.heatmap.layers.R
R/wedderburn.number.R
R/schmidt.plot.R
R/layer.temperature.R
R/lake.number.plot.R
R/wtr.lineseries.R
R/internal.energy.R
R/thermo.depth.R
R/center.buoyancy.R
R/timeseries.functions.R
R/buoyancy.freq.R
vignettes
vignettes/data.handling.Rnw
MD5
build
build/vignette.rds
DESCRIPTION
man
man/schmidt.plot.Rd
man/lake.number.plot.Rd
man/ts.meta.depths.Rd
man/load.bathy.Rd
man/internal.energy.Rd
man/wtr.heat.map.Rd
man/ts.center.buoyancy.Rd
man/wtr.plot.temp.Rd
man/wtr.lineseries.Rd
man/schmidt.stability.Rd
man/thermo.depth.Rd
man/get.offsets.Rd
man/uStar.Rd
man/wedderburn.number.Rd
man/wtr.heatmap.layers.Rd
man/ts.wedderburn.number.Rd
man/layer.temperature.Rd
man/ts.buoyancy.freq.Rd
man/buoyancy.freq.Rd
man/ts.layer.temperature.Rd
man/load.ts.Rd
man/center.buoyancy.Rd
man/lake.number.Rd
man/water.density.Rd
man/meta.depths.Rd
man/layer.density.Rd
rLakeAnalyzer documentation built on May 19, 2017, 1:41 p.m.