rLakeAnalyzer: Lake Physics Tools

Standardized methods for calculating common important derived physical features of lakes including water density based based on temperature, thermal layers, thermocline depth, lake number, Wedderburn number, Schmidt stability and others.

AuthorLuke Winslow, Jordan Read, Richard Woolway, Jennifer Brentrup, Taylor Leach, Jake Zwart
Date of publication2016-05-21 01:15:06
MaintainerLuke Winslow <lawinslow@gmail.com>
LicenseGPL (>= 2)
Version1.8.3

View on CRAN

Man pages

buoyancy.freq: Calculates buoyancy frequency.

center.buoyancy: Calculates the center of buoyancy.

get.offsets: Gets depths from data frame containing profile info.

internal.energy: Internal energy function (Joules)

lake.number: Calculate Lake Number

lake.number.plot: Plots time series of Lake Number

layer.density: Returns the average density of a layer between two depths.

layer.temperature: Returns the average temperature of a layer between two...

load.bathy: Import lake bathmynetry data.

load.ts: Load timeseries from properly formatted text file.

meta.depths: Calculate the Top and Bottom Depths of the Metalimnion

schmidt.plot: Creates a time series plot of Schmidt's stability

schmidt.stability: Calculate the Schmidt stability

thermo.depth: Calculate depth of the thermocline from a temperature...

ts.buoyancy.freq: Calculate the buoyancy (Brunt-Vaisala) frequency for a...

ts.center.buoyancy: Calculates the center of buoyancy for multiple temperature...

ts.layer.temperature: Calculate volume-weighted average water temperature across a...

ts.meta.depths: Calculate physical indices for a timeseries.

ts.wedderburn.number: Calculate Wedderburn number for a timeseries.

uStar: Calculates the water friction velocity, uStar

water.density: Estimate Water Density

wedderburn.number: Calculates Wedderburn Number for a lake.

wtr.heat.map: Plots a heat-map of water temperature.

wtr.heatmap.layers: Plots water temperature heatmap with major limnetic layers...

wtr.lineseries: Creates a line based plot of temperature profile time series

wtr.plot.temp: Creates a time series plot of the thermocline and top and...

Functions

buoyancy.freq Man page
center.buoyancy Man page
get.offsets Man page
internal.energy Man page
lake.number Man page
lake.number.plot Man page
layer.density Man page
layer.temperature Man page
load.bathy Man page
load.ts Man page
meta.depths Man page
schmidt.plot Man page
schmidt.stability Man page
thermo.depth Man page
ts.buoyancy.freq Man page
ts.center.buoyancy Man page
ts.internal.energy Man page
ts.lake.number Man page
ts.layer.temperature Man page
ts.meta.depths Man page
ts.schmidt.stability Man page
ts.thermo.depth Man page
ts.uStar Man page
ts.wedderburn.number Man page
uStar Man page
water.density Man page
wedderburn.number Man page
wtr.heat.map Man page
wtr.heatmap.layers Man page
wtr.lineseries Man page
wtr.plot.temp Man page

Files

rLakeAnalyzer
rLakeAnalyzer/inst
rLakeAnalyzer/inst/extdata
rLakeAnalyzer/inst/extdata/Sparkling.daily.wnd
rLakeAnalyzer/inst/extdata/Sparkling.bth
rLakeAnalyzer/inst/extdata/Sparkling.daily.wtr
rLakeAnalyzer/inst/extdata/sparkling.thermod.tsv
rLakeAnalyzer/inst/extdata/Sparkling.sthermod.tsv
rLakeAnalyzer/inst/extdata/Sparkling.wtr
rLakeAnalyzer/inst/extdata/Sparkling.wnd
rLakeAnalyzer/inst/doc
rLakeAnalyzer/inst/doc/data.handling.pdf
rLakeAnalyzer/inst/doc/data.handling.Rnw
rLakeAnalyzer/inst/doc/data.handling.R
rLakeAnalyzer/tests
rLakeAnalyzer/tests/testthat.R
rLakeAnalyzer/tests/testthat
rLakeAnalyzer/tests/testthat/test-thermo.depth.R
rLakeAnalyzer/NAMESPACE
rLakeAnalyzer/R
rLakeAnalyzer/R/helper.functions.R rLakeAnalyzer/R/load.data.R rLakeAnalyzer/R/water.density.R rLakeAnalyzer/R/uStar.R rLakeAnalyzer/R/layer.density.R rLakeAnalyzer/R/lake.number.R rLakeAnalyzer/R/meta.depths.R rLakeAnalyzer/R/wtr.plotting.R rLakeAnalyzer/R/wtr.plot.temp.R rLakeAnalyzer/R/schmidt.stability.R rLakeAnalyzer/R/wtr.heatmap.layers.R rLakeAnalyzer/R/wedderburn.number.R rLakeAnalyzer/R/schmidt.plot.R rLakeAnalyzer/R/layer.temperature.R rLakeAnalyzer/R/lake.number.plot.R rLakeAnalyzer/R/wtr.lineseries.R rLakeAnalyzer/R/internal.energy.R rLakeAnalyzer/R/thermo.depth.R rLakeAnalyzer/R/center.buoyancy.R rLakeAnalyzer/R/timeseries.functions.R rLakeAnalyzer/R/buoyancy.freq.R
rLakeAnalyzer/vignettes
rLakeAnalyzer/vignettes/data.handling.Rnw
rLakeAnalyzer/MD5
rLakeAnalyzer/build
rLakeAnalyzer/build/vignette.rds
rLakeAnalyzer/DESCRIPTION
rLakeAnalyzer/man
rLakeAnalyzer/man/schmidt.plot.Rd rLakeAnalyzer/man/lake.number.plot.Rd rLakeAnalyzer/man/ts.meta.depths.Rd rLakeAnalyzer/man/load.bathy.Rd rLakeAnalyzer/man/internal.energy.Rd rLakeAnalyzer/man/wtr.heat.map.Rd rLakeAnalyzer/man/ts.center.buoyancy.Rd rLakeAnalyzer/man/wtr.plot.temp.Rd rLakeAnalyzer/man/wtr.lineseries.Rd rLakeAnalyzer/man/schmidt.stability.Rd rLakeAnalyzer/man/thermo.depth.Rd rLakeAnalyzer/man/get.offsets.Rd rLakeAnalyzer/man/uStar.Rd rLakeAnalyzer/man/wedderburn.number.Rd rLakeAnalyzer/man/wtr.heatmap.layers.Rd rLakeAnalyzer/man/ts.wedderburn.number.Rd rLakeAnalyzer/man/layer.temperature.Rd rLakeAnalyzer/man/ts.buoyancy.freq.Rd rLakeAnalyzer/man/buoyancy.freq.Rd rLakeAnalyzer/man/ts.layer.temperature.Rd rLakeAnalyzer/man/load.ts.Rd rLakeAnalyzer/man/center.buoyancy.Rd rLakeAnalyzer/man/lake.number.Rd rLakeAnalyzer/man/water.density.Rd rLakeAnalyzer/man/meta.depths.Rd rLakeAnalyzer/man/layer.density.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.