rLakeAnalyzer: Lake Physics Tools

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Standardized methods for calculating common important derived physical features of lakes including water density based based on temperature, thermal layers, thermocline depth, lake number, Wedderburn number, Schmidt stability and others.

Author
Luke Winslow, Jordan Read, Richard Woolway, Jennifer Brentrup, Taylor Leach, Jake Zwart
Date of publication
2016-05-21 01:15:06
Maintainer
Luke Winslow <lawinslow@gmail.com>
License
GPL (>= 2)
Version
1.8.3

View on CRAN

Man pages

buoyancy.freq
Calculates buoyancy frequency.
center.buoyancy
Calculates the center of buoyancy.
get.offsets
Gets depths from data frame containing profile info.
internal.energy
Internal energy function (Joules)
lake.number
Calculate Lake Number
lake.number.plot
Plots time series of Lake Number
layer.density
Returns the average density of a layer between two depths.
layer.temperature
Returns the average temperature of a layer between two...
load.bathy
Import lake bathmynetry data.
load.ts
Load timeseries from properly formatted text file.
meta.depths
Calculate the Top and Bottom Depths of the Metalimnion
schmidt.plot
Creates a time series plot of Schmidt's stability
schmidt.stability
Calculate the Schmidt stability
thermo.depth
Calculate depth of the thermocline from a temperature...
ts.buoyancy.freq
Calculate the buoyancy (Brunt-Vaisala) frequency for a...
ts.center.buoyancy
Calculates the center of buoyancy for multiple temperature...
ts.layer.temperature
Calculate volume-weighted average water temperature across a...
ts.meta.depths
Calculate physical indices for a timeseries.
ts.wedderburn.number
Calculate Wedderburn number for a timeseries.
uStar
Calculates the water friction velocity, uStar
water.density
Estimate Water Density
wedderburn.number
Calculates Wedderburn Number for a lake.
wtr.heat.map
Plots a heat-map of water temperature.
wtr.heatmap.layers
Plots water temperature heatmap with major limnetic layers...
wtr.lineseries
Creates a line based plot of temperature profile time series
wtr.plot.temp
Creates a time series plot of the thermocline and top and...

Files in this package

rLakeAnalyzer
rLakeAnalyzer/inst
rLakeAnalyzer/inst/extdata
rLakeAnalyzer/inst/extdata/Sparkling.daily.wnd
rLakeAnalyzer/inst/extdata/Sparkling.bth
rLakeAnalyzer/inst/extdata/Sparkling.daily.wtr
rLakeAnalyzer/inst/extdata/sparkling.thermod.tsv
rLakeAnalyzer/inst/extdata/Sparkling.sthermod.tsv
rLakeAnalyzer/inst/extdata/Sparkling.wtr
rLakeAnalyzer/inst/extdata/Sparkling.wnd
rLakeAnalyzer/inst/doc
rLakeAnalyzer/inst/doc/data.handling.pdf
rLakeAnalyzer/inst/doc/data.handling.Rnw
rLakeAnalyzer/inst/doc/data.handling.R
rLakeAnalyzer/tests
rLakeAnalyzer/tests/testthat.R
rLakeAnalyzer/tests/testthat
rLakeAnalyzer/tests/testthat/test-thermo.depth.R
rLakeAnalyzer/NAMESPACE
rLakeAnalyzer/R
rLakeAnalyzer/R/helper.functions.R
rLakeAnalyzer/R/load.data.R
rLakeAnalyzer/R/water.density.R
rLakeAnalyzer/R/uStar.R
rLakeAnalyzer/R/layer.density.R
rLakeAnalyzer/R/lake.number.R
rLakeAnalyzer/R/meta.depths.R
rLakeAnalyzer/R/wtr.plotting.R
rLakeAnalyzer/R/wtr.plot.temp.R
rLakeAnalyzer/R/schmidt.stability.R
rLakeAnalyzer/R/wtr.heatmap.layers.R
rLakeAnalyzer/R/wedderburn.number.R
rLakeAnalyzer/R/schmidt.plot.R
rLakeAnalyzer/R/layer.temperature.R
rLakeAnalyzer/R/lake.number.plot.R
rLakeAnalyzer/R/wtr.lineseries.R
rLakeAnalyzer/R/internal.energy.R
rLakeAnalyzer/R/thermo.depth.R
rLakeAnalyzer/R/center.buoyancy.R
rLakeAnalyzer/R/timeseries.functions.R
rLakeAnalyzer/R/buoyancy.freq.R
rLakeAnalyzer/vignettes
rLakeAnalyzer/vignettes/data.handling.Rnw
rLakeAnalyzer/MD5
rLakeAnalyzer/build
rLakeAnalyzer/build/vignette.rds
rLakeAnalyzer/DESCRIPTION
rLakeAnalyzer/man
rLakeAnalyzer/man/schmidt.plot.Rd
rLakeAnalyzer/man/lake.number.plot.Rd
rLakeAnalyzer/man/ts.meta.depths.Rd
rLakeAnalyzer/man/load.bathy.Rd
rLakeAnalyzer/man/internal.energy.Rd
rLakeAnalyzer/man/wtr.heat.map.Rd
rLakeAnalyzer/man/ts.center.buoyancy.Rd
rLakeAnalyzer/man/wtr.plot.temp.Rd
rLakeAnalyzer/man/wtr.lineseries.Rd
rLakeAnalyzer/man/schmidt.stability.Rd
rLakeAnalyzer/man/thermo.depth.Rd
rLakeAnalyzer/man/get.offsets.Rd
rLakeAnalyzer/man/uStar.Rd
rLakeAnalyzer/man/wedderburn.number.Rd
rLakeAnalyzer/man/wtr.heatmap.layers.Rd
rLakeAnalyzer/man/ts.wedderburn.number.Rd
rLakeAnalyzer/man/layer.temperature.Rd
rLakeAnalyzer/man/ts.buoyancy.freq.Rd
rLakeAnalyzer/man/buoyancy.freq.Rd
rLakeAnalyzer/man/ts.layer.temperature.Rd
rLakeAnalyzer/man/load.ts.Rd
rLakeAnalyzer/man/center.buoyancy.Rd
rLakeAnalyzer/man/lake.number.Rd
rLakeAnalyzer/man/water.density.Rd
rLakeAnalyzer/man/meta.depths.Rd
rLakeAnalyzer/man/layer.density.Rd