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SEA performs simultaneous feature-set testing for (gen)omics data. It tests the unified null hypothesis and controls the family-wise error rate for all possible pathways. The unified null hypothesis is defined as: "The proportion of true features in the set is less than or equal to a threshold." Family-wise error rate control is provided through use of closed testing with Simes test. There are some practical functions to play around with the pathways of interest.
Package details |
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Author | Mitra Ebrahimpoor |
Maintainer | Mitra Ebrahimpoor<mitra.ebrahimpoor@gmail.com> |
License | GPL (>= 2) |
Version | 2.1.2 |
Package repository | View on CRAN |
Installation |
Install the latest version of this package by entering the following in R:
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