radiomics: Radiomic Image Processing Toolbox
Version 0.1.2

Functions to extract first and second order statistics from images.

AuthorJoel Carlson
Date of publication2016-05-04 10:02:49
MaintainerJoel Carlson <jnkcarlson@gmail.com>
LicenseMIT + file LICENSE
Version0.1.2
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("radiomics")

Getting started

README.md
Texture Analysis

Popular man pages

calc_features: Calculate texture and first order statistics.
glcm: Gray level co-occurrence matrix.
glrlm: Gray level run length matrix.
glrlm_features: GLRLM Features
glszm: Gray level size zone matrix.
mglszm: Multiple gray level size zone matrix.
radiomics: radiomics: A texture analysis toolbox for image...
See all...

All man pages Function index File listing

Man pages

bars: Vertical Bars
calc_features: Calculate texture and first order statistics.
discretizeImage: Image Discretization.
discretizeImage2: Image Discretization.
first_order_features: First order features
glcm: Gray level co-occurrence matrix.
glcm0: Create a 0 degree GLCM
glcm135: Create a 135 degree GLCM
glcm45: Create a 45 degree GLCM
glcm90: Create a 90 degree GLCM
glcm_features: GLCM Features
glrlm: Gray level run length matrix.
glrlm_features: GLRLM Features
glszm: Gray level size zone matrix.
glszm_features: GLSZM Features
hallbey: Hall Bey
image.radiomics: Texture Matrix Visualization
mglszm: Multiple gray level size zone matrix.
noise: Noise
psf: Point Spread Function
radiomics: radiomics: A texture analysis toolbox for image...
tumor: Brain Tumor Slice

Functions

add_to_rlm Source code
bars Man page
calc_RMS Man page Source code
calc_energy Man page Source code
calc_entropy Man page Source code
calc_features Man page
calc_features,glcm-method Man page
calc_features,glrlm-method Man page
calc_features,glszm-method Man page
calc_features,matrix-method Man page
calc_features,mglszm-method Man page
calc_kurtosis Man page Source code
calc_max Man page Source code
calc_mean Man page Source code
calc_meanDeviation Man page Source code
calc_median Man page Source code
calc_min Man page Source code
calc_sd Man page Source code
calc_skewness Man page Source code
calc_uniformity Man page Source code
calc_variance Man page Source code
colscale Source code
discretizeImage Man page Source code
discretizeImage2 Man page Source code
first_order_features Man page
glcm Man page Source code
glcm0 Man page Source code
glcm135 Man page Source code
glcm45 Man page Source code
glcm90 Man page Source code
glcm_IDMN Man page Source code
glcm_IDN Man page Source code
glcm_autoCorrelation Man page Source code
glcm_cProminence Man page Source code
glcm_cShade Man page Source code
glcm_cTendency Man page Source code
glcm_contrast Man page Source code
glcm_correlation Man page Source code
glcm_differenceEntropy Man page Source code
glcm_dissimilarity Man page Source code
glcm_energy Man page Source code
glcm_entropy Man page Source code
glcm_features Man page
glcm_homogeneity1 Man page Source code
glcm_homogeneity2 Man page Source code
glcm_inverseVariance Man page Source code
glcm_maxProb Man page Source code
glcm_mean Man page Source code
glcm_sumAverage Man page Source code
glcm_sumEntropy Man page Source code
glcm_sumVariance Man page Source code
glcm_variance Man page Source code
glcm_xminusy Source code
glcm_xmy Source code
glcm_xplusy Source code
glcm_xpy Source code
glrlm Man page Source code
glrlm_GLN Man page Source code
glrlm_HGLRE Man page Source code
glrlm_LGLRE Man page Source code
glrlm_LRE Man page Source code
glrlm_LRHGLE Man page Source code
glrlm_LRLGLE Man page Source code
glrlm_RLN Man page Source code
glrlm_RP Man page Source code
glrlm_SRE Man page Source code
glrlm_SRHGLE Man page Source code
glrlm_SRLGLE Man page Source code
glrlm_features Man page
glszm Man page Source code
glszm_HIE Man page Source code
glszm_HILAE Man page Source code
glszm_HISAE Man page Source code
glszm_IV Man page Source code
glszm_LAE Man page Source code
glszm_LIE Man page Source code
glszm_LILAE Man page Source code
glszm_LISAE Man page Source code
glszm_SAE Man page Source code
glszm_SZV Man page Source code
glszm_ZP Man page Source code
glszm_features Man page
hallbey Man page
image,glcm-method Man page
image,glrlm-method Man page
image,glszm-method Man page
image,mglszm-method Man page
image.radiomics Man page
mglszm Man page Source code
noise Man page
onAttach Source code
onUnload Source code
psf Man page
radiomics Man page
radiomics-package Man page
tumor Man page

Files

inst
inst/doc
inst/doc/TextureAnalysis.html
inst/doc/TextureAnalysis.Rmd
inst/doc/TextureAnalysis.R
tests
tests/csvs
tests/csvs/readme.Rmd
tests/csvs/readme.html
tests/csvs/glszm_features
tests/csvs/glszm_features/hb.csv
tests/csvs/glszm_features/tumor.csv
tests/csvs/glszm_features/noise.csv
tests/csvs/glszm_features/bars.csv
tests/csvs/glrlm_features
tests/csvs/glrlm_features/noise90.csv
tests/csvs/glrlm_features/noise135.csv
tests/csvs/glrlm_features/hb135.csv
tests/csvs/glrlm_features/tumor0.csv
tests/csvs/glrlm_features/noise45.csv
tests/csvs/glrlm_features/hb0.csv
tests/csvs/glrlm_features/tumor45.csv
tests/csvs/glrlm_features/bars90.csv
tests/csvs/glrlm_features/hb45.csv
tests/csvs/glrlm_features/tumor90.csv
tests/csvs/glrlm_features/noise0.csv
tests/csvs/glrlm_features/tumor135.csv
tests/csvs/glrlm_features/hb90.csv
tests/csvs/glrlm_features/bars45.csv
tests/csvs/glrlm_features/bars0.csv
tests/csvs/glrlm_features/bars135.csv
tests/csvs/cran-comments.md
tests/csvs/glrlm
tests/csvs/glrlm/noise90.csv
tests/csvs/glrlm/noise135.csv
tests/csvs/glrlm/hb135.csv
tests/csvs/glrlm/tumor0.csv
tests/csvs/glrlm/noise45.csv
tests/csvs/glrlm/hb0.csv
tests/csvs/glrlm/tumor45.csv
tests/csvs/glrlm/bars90.csv
tests/csvs/glrlm/hb45.csv
tests/csvs/glrlm/tumor90.csv
tests/csvs/glrlm/noise0.csv
tests/csvs/glrlm/tumor135.csv
tests/csvs/glrlm/hb90.csv
tests/csvs/glrlm/bars45.csv
tests/csvs/glrlm/bars0.csv
tests/csvs/glrlm/bars135.csv
tests/csvs/glcm_features
tests/csvs/glcm_features/noise90.csv
tests/csvs/glcm_features/noise135.csv
tests/csvs/glcm_features/hb135.csv
tests/csvs/glcm_features/tumor0.csv
tests/csvs/glcm_features/noise45.csv
tests/csvs/glcm_features/hb0.csv
tests/csvs/glcm_features/tumor45.csv
tests/csvs/glcm_features/bars90.csv
tests/csvs/glcm_features/hb45.csv
tests/csvs/glcm_features/tumor90.csv
tests/csvs/glcm_features/noise0.csv
tests/csvs/glcm_features/tumor135.csv
tests/csvs/glcm_features/hb90.csv
tests/csvs/glcm_features/bars45.csv
tests/csvs/glcm_features/bars0.csv
tests/csvs/glcm_features/bars135.csv
tests/csvs/glszm
tests/csvs/glszm/hb.csv
tests/csvs/glszm/tumor.csv
tests/csvs/glszm/noise.csv
tests/csvs/glszm/bars.csv
tests/csvs/glcm
tests/csvs/glcm/noise90.csv
tests/csvs/glcm/noise135.csv
tests/csvs/glcm/hb135.csv
tests/csvs/glcm/tumor0.csv
tests/csvs/glcm/noise45.csv
tests/csvs/glcm/hb0.csv
tests/csvs/glcm/tumor45.csv
tests/csvs/glcm/bars90.csv
tests/csvs/glcm/hb45.csv
tests/csvs/glcm/tumor90.csv
tests/csvs/glcm/noise0.csv
tests/csvs/glcm/tumor135.csv
tests/csvs/glcm/hb90.csv
tests/csvs/glcm/bars45.csv
tests/csvs/glcm/tumor10.csv
tests/csvs/glcm/bars0.csv
tests/csvs/glcm/bars135.csv
tests/csvs/mglszm
tests/csvs/mglszm/hb.csv
tests/csvs/mglszm/tumor.csv
tests/csvs/mglszm/noise.csv
tests/csvs/mglszm/bars.csv
tests/testthat.R
tests/testthat
tests/testthat/test_GLCM.R
tests/testthat/test_MGLSZM.R
tests/testthat/test_FirstOrder.R
tests/testthat/test_GLSZMFeatures.R
tests/testthat/test_discretizeImage.R
tests/testthat/test_GLRLMFeatures.R
tests/testthat/test_GLRLM.R
tests/testthat/test_GLSZM.R
tests/testthat/test_GLCMFeatures.R
src
src/glcm.cpp
src/RcppExports.cpp
NAMESPACE
NEWS.md
data
data/bars.rda
data/noise.rda
data/psf.rda
data/tumor.rda
data/hallbey.rda
R
R/ImageQuantize.R
R/GLSZM.R
R/startupMessage.R
R/FirstOrder.R
R/GLCMFeatures.R
R/GLSZMFeatures.R
R/GLRLM.R
R/data.R
R/GLRLMFeatures.R
R/RcppExports.R
R/image.R
R/MGLSZM.R
R/CalculateFeatures.R
R/radiomics.R
R/GLCM.R
vignettes
vignettes/TextureAnalysis.Rmd
README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/calc_features.Rd
man/glrlm.Rd
man/glcm45.Rd
man/glcm.Rd
man/glrlm_features.Rd
man/glcm0.Rd
man/glszm_features.Rd
man/hallbey.Rd
man/radiomics.Rd
man/first_order_features.Rd
man/discretizeImage2.Rd
man/glcm90.Rd
man/discretizeImage.Rd
man/tumor.Rd
man/bars.Rd
man/glcm135.Rd
man/glcm_features.Rd
man/noise.Rd
man/mglszm.Rd
man/psf.Rd
man/glszm.Rd
man/image.radiomics.Rd
LICENSE
radiomics documentation built on May 19, 2017, 11:17 a.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.