rafalib: Convenience Functions for Routine Data Exploration

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A series of shortcuts for routine tasks originally developed by Rafael A. Irizarry to facilitate data exploration.

Author
Rafael A. Irizarry and Michael I. Love
Date of publication
2015-08-09 00:00:40
Maintainer
Rafael A. Irizarry <rafa@jimmy.harvard.edu>
License
Artistic-2.0
Version
1.0.0

View on CRAN

Man pages

as.fumeric
converts to factor and then numeric
bartab
bartab
imagemat
image of a matrix
imagesort
image with sorted rows
install_bioc
Install or update Bioconductor and CRAN packages
largeobj
What are the largest objects in memory?
maplot
Bland Altman plot aka MA plot
mypar
mypar
myplclust
plclust in colour
nullplot
nullplot
peek
peek at the top of a text file
popsd
population standard deviation
popvar
population variance
sboxplot
smart boxplot
shist
smooth histogram
splitit
split it
splot
smart plot

Files in this package

rafalib
rafalib/NAMESPACE
rafalib/R
rafalib/R/maplot.R
rafalib/R/shist.R
rafalib/R/splot.R
rafalib/R/nullplot.R
rafalib/R/largeobj.R
rafalib/R/as.fumeric.R
rafalib/R/imagesort.R
rafalib/R/imagemat.R
rafalib/R/peek.R
rafalib/R/sboxplot.R
rafalib/R/bartab.R
rafalib/R/splitit.R
rafalib/R/mypar.R
rafalib/R/myplclust.R
rafalib/R/install_bioc.R
rafalib/R/popvar.R
rafalib/README.md
rafalib/MD5
rafalib/DESCRIPTION
rafalib/man
rafalib/man/largeobj.Rd
rafalib/man/maplot.Rd
rafalib/man/splot.Rd
rafalib/man/imagesort.Rd
rafalib/man/mypar.Rd
rafalib/man/as.fumeric.Rd
rafalib/man/sboxplot.Rd
rafalib/man/splitit.Rd
rafalib/man/install_bioc.Rd
rafalib/man/myplclust.Rd
rafalib/man/peek.Rd
rafalib/man/nullplot.Rd
rafalib/man/popsd.Rd
rafalib/man/imagemat.Rd
rafalib/man/shist.Rd
rafalib/man/bartab.Rd
rafalib/man/popvar.Rd