ramps: Bayesian Geostatistical Modeling with RAMPS
Version 0.6-14

Bayesian geostatistical modeling of Gaussian processes using a reparameterized and marginalized posterior sampling (RAMPS) algorithm designed to lower autocorrelation in MCMC samples. Package performance is tuned for large spatial datasets.

Browse man pages Browse package API and functions Browse package files

AuthorBrian J Smith [aut, cre], Jun Yan [aut], Mary Kathryn Cowles [aut]
Date of publication2016-06-29 23:30:36
MaintainerBrian J Smith <brian-j-smith@uiowa.edu>
LicenseGPL-2
Version0.6-14
URL http://www.jstatsoft.org/v25/i10
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("ramps")

Man pages

corRCauchy: Cauchy Spatial Correlation Structure
corRClasses: Spatial Correlation Structure Classes
corRExp: Exponential Spatial Correlation Structure
corRExp2: Non-Separable Exponential Spatio-Temporal Correlation...
corRExpwr: Powered Exponential Spatial Correlation Structure
corRExpwr2: Non-Separable Powered Exponential Spatio-Temporal Correlation...
corRExpwr2Dt: Non-Separable Temporally Integrated Powered Exponential...
corRGaus: Gaussian Spatial Correlation Structure
corRGneit: Gneiting Spatial Correlation Structure
corRLin: Linear Spatial Correlation Structure
corRMatern: Matern Spatial Correlation Structure
corRSpher: Spherical Spatial Correlation Structure
corRWave: Sine Wave Spatial Correlation Structure
DIC: Deviance Information Criterion
expand.chain: Expand MCMC Samples for georamps Model Fits
genUSStateGrid: Generating a Grid over a US State
genUSStateSites: Generating Random Sites in a US State
georamps: Bayesian Geostatistical Model Fitting with RAMPS
NURE: Dataset of USGS NURE Uranium Measurements
param: Initialization of georamps Model Parameters
plot: Posterior Spatial Distribution Plots
predict.ramps: Prediction Method for georamps Model Fits
ramps.control: Auxiliary for Controlling georamps Model Fitting
simJSS: Dataset of Simulated Measurements from JSS Publication
summary.ramps: Posterior Summaries of georamps Model Fits
window: Subsetting of MCMC Sampler Results

Functions

DIC Man page Source code
DIC.ramps Man page Source code
Dim.corRExpwr2Dt Source code
Dim.corRSpatial Source code
Dim.corRSpatioTemporal Source code
Dim.corRStruct Source code
Initialize.corRExp2 Source code
Initialize.corRExpwr Source code
Initialize.corRExpwr2 Source code
Initialize.corRExpwr2Dt Source code
Initialize.corRMatern Source code
Initialize.corRSpatial Source code
Initialize.corRSpatioTemporal Source code
Initialize.corRStruct Source code
NURE Man page
NURE.grid Man page
anisotropic Source code
coef.corRSpatial Source code
coef.corRSpatioTemporal Source code
cor.cauchy Source code
cor.exp Source code
cor.exp2 Source code
cor.exp2dt Source code
cor.gneiting Source code
cor.lin Source code
cor.matern Source code
cor.spher Source code
cor.wave Source code
corFactor.corRExpwr2Dt Source code
corFactor.corRSpatial Source code
corFactor.corRSpatioTemporal Source code
corMatrix.corRExpwr2Dt Source code
corMatrix.corRSpatial Source code
corMatrix.corRSpatioTemporal Source code
corRCauchy Man page Source code
corRClasses Man page
corRExp Man page Source code
corRExp2 Man page Source code
corRExpwr Man page Source code
corRExpwr2 Man page Source code
corRExpwr2Dt Man page Source code
corRGaus Man page Source code
corRGneit Man page Source code
corRLin Man page Source code
corRMatern Man page Source code
corRSpher Man page Source code
corRWave Man page Source code
dist2 Source code
expand.chain Man page Source code
genUSStateGrid Man page Source code
genUSStateSites Man page Source code
georamps Man page Source code
getCovariate.corRExpwr2Dt Source code
getCovariate.corRSpatial Source code
getCovariate.corRSpatioTemporal Source code
haversine Source code
inbounds Source code
is.param Source code
kappa2kappa.e Source code
kappa2kappa.re Source code
kappa2kappa.z Source code
length.param Source code
makeFirstSimplex Source code
mpdbeta Source code
mpdbeta2 Source code
mpdbetaz Source code
mpdbetaz2 Source code
mpdpred Source code
mpdpred2 Source code
name.ext Source code
onLoad Source code
param Man page Source code
params2beta Source code
params2kappa Source code
params2phi Source code
plot.default Source code
plot.predict.ramps Man page Source code
plot.ramps Man page Source code
predict.ramps Man page Source code
print.corRStruct Source code
print.iter Source code
print.predict.ramps Source code
print.ramps Man page Source code
ramps.control Man page Source code
ramps.engine Source code
rdirichlet Source code
rmvnorm2 Source code
runif.simplex Source code
shrinkSimplex Source code
sigma2init Source code
sigma2scale Source code
sigma2shape Source code
sigma2tuning Source code
simGrid Man page
simIowa Man page
simJSS Man page
sliceSimplex Source code
summary.ramps Man page Source code
unique.sites Source code
window.predict.ramps Man page Source code
window.ramps Man page Source code
write.header Source code
write.params Source code

Files

inst
inst/CITATION
NAMESPACE
data
data/simJSS.rda
data/NURE.rda
R
R/DIC.R
R/utils.R
R/corStruct.R
R/graphics.R
R/control.R
R/predict.R
R/georamps.R
R/mpdensity.R
R/simplex.R
R/engine.R
R/mpdpred.R
MD5
DESCRIPTION
man
man/corRExp.Rd
man/georamps.Rd
man/corRSpher.Rd
man/DIC.Rd
man/NURE.Rd
man/param.Rd
man/corRExpwr2.Rd
man/window.Rd
man/predict.ramps.Rd
man/corRClasses.Rd
man/summary.ramps.Rd
man/corRGneit.Rd
man/simJSS.Rd
man/corRCauchy.Rd
man/corRMatern.Rd
man/corRGaus.Rd
man/ramps.control.Rd
man/corRExpwr.Rd
man/corRWave.Rd
man/corRLin.Rd
man/genUSStateGrid.Rd
man/expand.chain.Rd
man/genUSStateSites.Rd
man/corRExpwr2Dt.Rd
man/plot.Rd
man/corRExp2.Rd
ramps documentation built on May 20, 2017, 2:17 a.m.