spp.plot: Plot species

In raptr: Representative and Adequate Prioritization Toolkit in R

Plot species

Description

This function plots the distribution of species across the study area.

Usage

spp.plot(x, species, ...)

## S3 method for class 'RapData'
spp.plot(
  x,
  species,
  prob.color.palette = "YlGnBu",
  pu.color.palette = c("#4D4D4D", "#00FF00", "#FFFF00", "#FF0000"),
  basemap = "none",
  alpha = ifelse(identical(basemap, "none"), 1, 0.7),
  grayscale = FALSE,
  main = NULL,
  force.reset = FALSE,
  ...
)

## S3 method for class 'RapUnsolved'
spp.plot(
  x,
  species,
  prob.color.palette = "YlGnBu",
  pu.color.palette = c("#4D4D4D", "#00FF00", "#FFFF00", "#FF0000"),
  basemap = "none",
  alpha = ifelse(basemap == "none", 1, 0.7),
  grayscale = FALSE,
  main = NULL,
  force.reset = FALSE,
  ...
)

## S3 method for class 'RapSolved'
spp.plot(
  x,
  species,
  y = 0,
  prob.color.palette = "YlGnBu",
  pu.color.palette = c("#4D4D4D", "#00FF00", "#FFFF00", "#FF0000"),
  basemap = "none",
  alpha = ifelse(basemap == "none", 1, 0.7),
  grayscale = FALSE,
  main = NULL,
  force.reset = FALSE,
  ...
)

Arguments

x	RapData(), RapUnsolved(), or RapSolved() object.
species	character name of species, or integer index for species.
...	not used.
prob.color.palette	character name of color palette to denote probability of occupancy of the species in planning units (see RColorBrewer::brewer.pal()). Defaults to "YlGnBu".
pu.color.palette	character vector of colors to indicate planning unit statuses. Defaults to c("grey30", "green", "black", "red") which indicate not selected, selected, locked in, and locked out (respectively).
basemap	character object indicating the type of basemap to use (see basemap()). Valid options include "none", "roadmap", "mobile", "satellite", "terrain", "hybrid", "mapmaker-roadmap", "mapmaker-hybrid". Defaults to "none" such that no basemap is shown.
alpha	numeric value to indicating the transparency level for coloring the planning units.
grayscale	logical should the basemap be gray-scaled?
main	character title for the plot. Defaults to NULL and a default title is used.
force.reset	logical if basemap data has been cached, should it be re-downloaded?
y	NULL integer 0 to return values for the best solution, integer value greater than 0 for y'th solution value.

Details

This function requires the RgoogleMaps package to be installed in order to create display a basemap.

Examples

## Not run: 
# load RapSolved objects
data(sim_ru, sim_rs)

# plot first species in sim_ru
spp.plot(sim_ru, species = 1)

# plot "bimodal" species in sim_rs
spp.plot(sim_rs, species = "bimodal")

## End(Not run)

raptr documentation built on June 22, 2024, 11:13 a.m.