rareGE: Testing Gene-Environment Interaction for Rare Genetic Variants

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Tests gene-environment interaction for rare genetic variants using Sequence Kernel Association Test (SKAT) type gene-based tests. Includes two tests for the interaction term only, and one joint test for genetic main effects and gene-environment interaction.

Author
Han Chen
Date of publication
2014-07-30 06:57:34
Maintainer
Han Chen <hanchen@hsph.harvard.edu>
License
GPL-3
Version
0.1
URLs

View on CRAN

Man pages

INT_FIX
Gene-environment interaction test treating genetic main...
INT_RAN
Gene-environment interaction test treating genetic main...
JOINT
Joint test of genetic main effects and gene-environment...
rareGE
Tests for gene-environment interaction and joint test of...
rareGEgeno
Example genotype data
rareGE-package
Testing Gene-Environment Interaction for Rare Genetic...
rareGEpheno
Example phenotype data
wuweights
Wu weight function

Files in this package

rareGE
rareGE/NAMESPACE
rareGE/data
rareGE/data/rareGEgeno.rda
rareGE/data/rareGEpheno.rda
rareGE/R
rareGE/R/rareGE.R
rareGE/MD5
rareGE/DESCRIPTION
rareGE/man
rareGE/man/INT_FIX.Rd
rareGE/man/rareGEgeno.Rd
rareGE/man/wuweights.Rd
rareGE/man/INT_RAN.Rd
rareGE/man/rareGE.Rd
rareGE/man/rareGE-package.Rd
rareGE/man/JOINT.Rd
rareGE/man/rareGEpheno.Rd