rareGE: Testing Gene-Environment Interaction for Rare Genetic Variants
Version 0.1

Tests gene-environment interaction for rare genetic variants using Sequence Kernel Association Test (SKAT) type gene-based tests. Includes two tests for the interaction term only, and one joint test for genetic main effects and gene-environment interaction.

Browse man pages Browse package API and functions Browse package files

AuthorHan Chen
Date of publication2014-07-30 06:57:34
MaintainerHan Chen <hanchen@hsph.harvard.edu>
LicenseGPL-3
Version0.1
URL http://www.hsph.harvard.edu/han-chen/
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("rareGE")

Man pages

INT_FIX: Gene-environment interaction test treating genetic main...
INT_RAN: Gene-environment interaction test treating genetic main...
JOINT: Joint test of genetic main effects and gene-environment...
rareGE: Tests for gene-environment interaction and joint test of...
rareGEgeno: Example genotype data
rareGE-package: Testing Gene-Environment Interaction for Rare Genetic...
rareGEpheno: Example phenotype data
wuweights: Wu weight function

Functions

INT_FIX Man page Source code
INT_RAN Man page Source code
JOINT Man page Source code
LiuParams Source code
pKuonen Source code
rareGE Man page Source code
rareGE-package Man page
rareGE_joint_mc Source code
rareGEgeno Man page
rareGEpheno Man page
wuweights Man page Source code

Files

NAMESPACE
data
data/rareGEgeno.rda
data/rareGEpheno.rda
R
R/rareGE.R
MD5
DESCRIPTION
man
man/INT_FIX.Rd
man/rareGEgeno.Rd
man/wuweights.Rd
man/INT_RAN.Rd
man/rareGE.Rd
man/rareGE-package.Rd
man/JOINT.Rd
man/rareGEpheno.Rd
rareGE documentation built on May 19, 2017, 4:30 p.m.