anoles: Data and phylogenetic tree for Anolis lizards
In ratematrix: Bayesian Estimation of the Evolutionary Rate Matrix
anoles R Documentation
Data and phylogenetic tree for Anolis lizards
Description
See description of the data in Caetano and Harmon (2018). Measurements are log-transformed. Morphological data was compiled from Pinto et al. (2008), Mahler (2010), and Moreno-Arias and Calderon-Espinosa (2016). "Limb_length" data is a composite measurement calculated from the sum of the parts of the front limb.
Usage
data(anoles)
Format
A list with a dataframe with the morphological data ($data) and a list of stochastic mapped trees with three regimes "island", "mainland" and "mainland.2" ($phy.map).
References
Moreno-Arias, R. A., and M. L. Calderon-Espinosa. 2016. Patterns of morphological diversification of mainland Anolis lizards from northwestern South America. Zool J Linn Soc 176:632–647.
Pinto, G., D. L. Mahler, L. J. Harmon, and J. B. Losos. 2008. Testing the island effect in adaptive radiation: rates and patterns of morphological diversification in Caribbean and mainland Anolis lizards. Proc Biol Sci 275:2749–2757.
Mahler, D. L., L. J. Revell, R. E. Glor, and J. B. Losos. 2010. Ecological Opportunity and the Rate of Morphological Evolution in the Diversification of Greater Antillean Anoles. Evolution 64:2731–2745.
ratematrix documentation built on June 3, 2022, 9:06 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| anoles | R Documentation |
Data and phylogenetic tree for Anolis lizards
Description
See description of the data in Caetano and Harmon (2018). Measurements are log-transformed. Morphological data was compiled from Pinto et al. (2008), Mahler (2010), and Moreno-Arias and Calderon-Espinosa (2016). "Limb_length" data is a composite measurement calculated from the sum of the parts of the front limb.
Usage
data(anoles)
Format
A list with a dataframe with the morphological data ($data) and a list of stochastic mapped trees with three regimes "island", "mainland" and "mainland.2" ($phy.map).
References
Moreno-Arias, R. A., and M. L. Calderon-Espinosa. 2016. Patterns of morphological diversification of mainland Anolis lizards from northwestern South America. Zool J Linn Soc 176:632–647.
Pinto, G., D. L. Mahler, L. J. Harmon, and J. B. Losos. 2008. Testing the island effect in adaptive radiation: rates and patterns of morphological diversification in Caribbean and mainland Anolis lizards. Proc Biol Sci 275:2749–2757.
Mahler, D. L., L. J. Revell, R. E. Glor, and J. B. Losos. 2010. Ecological Opportunity and the Rate of Morphological Evolution in the Diversification of Greater Antillean Anoles. Evolution 64:2731–2745.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.