rbgm: Tools for 'Box Geometry Model' (BGM) Files and Topology for the Atlantis Ecosystem Model

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Facilities for working with Atlantis box-geometry model (BGM) files. Atlantis is a deterministic, biogeochemical, whole-of-ecosystem model. Functions are provided to read from BGM files directly, preserving their internal topology, as well as helper functions to generate 'Spatial' objects. This functionality aims to simplify the creation and modification of box and geometry as well as the ability to integrate with other data sources.

Author
Michael D. Sumner [aut, cre]
Date of publication
2016-07-22 19:29:23
Maintainer
Michael D. Sumner <mdsumner@gmail.com>
License
GPL-3
Version
0.0.4
URLs

View on CRAN

Man pages

bgmfile
Read BGM
build_dz
Build Atlantis dz Values
nodeSpatial
Vertices as Spatial points.
rbgm-package
Utilities for BGM files for Atlantis
rbgm-Spatial
Convert to Spatial

Files in this package

rbgm
rbgm/inst
rbgm/inst/doc
rbgm/inst/doc/BGM_Spatial.R
rbgm/inst/doc/BGMfiles.Rmd
rbgm/inst/doc/BGM_examplefiles.R
rbgm/inst/doc/BGMfiles.html
rbgm/inst/doc/BGM_examplefiles.Rmd
rbgm/inst/doc/BGM_examplefiles.html
rbgm/inst/doc/BGMfiles.R
rbgm/inst/doc/BGM_Spatial.Rmd
rbgm/inst/doc/BGM_Spatial.html
rbgm/tests
rbgm/tests/testthat.R
rbgm/tests/testthat
rbgm/tests/testthat/test-round-trip.R
rbgm/tests/testthat/test-parse.R
rbgm/tests/testthat/test-basic-bgm.R
rbgm/tests/testthat/test-read.R
rbgm/NAMESPACE
rbgm/NEWS.md
rbgm/R
rbgm/R/readfaces.r
rbgm/R/rbgm.R
rbgm/R/utils.r
rbgm/R/Spatial.r
rbgm/R/bgmfile.r
rbgm/R/parse.r
rbgm/vignettes
rbgm/vignettes/BGMfiles.Rmd
rbgm/vignettes/BGM_examplefiles.Rmd
rbgm/vignettes/BGM_Spatial.Rmd
rbgm/README.md
rbgm/MD5
rbgm/build
rbgm/build/vignette.rds
rbgm/DESCRIPTION
rbgm/man
rbgm/man/rbgm-package.Rd
rbgm/man/rbgm-Spatial.Rd
rbgm/man/nodeSpatial.Rd
rbgm/man/build_dz.Rd
rbgm/man/bgmfile.Rd