rbgm: Tools for 'Box Geometry Model' (BGM) Files and Topology for the Atlantis Ecosystem Model
Version 0.0.4

Facilities for working with Atlantis box-geometry model (BGM) files. Atlantis is a deterministic, biogeochemical, whole-of-ecosystem model. Functions are provided to read from BGM files directly, preserving their internal topology, as well as helper functions to generate 'Spatial' objects. This functionality aims to simplify the creation and modification of box and geometry as well as the ability to integrate with other data sources.

Browse man pages Browse package API and functions Browse package files

AuthorMichael D. Sumner [aut, cre]
Date of publication2016-07-22 19:29:23
MaintainerMichael D. Sumner <mdsumner@gmail.com>
LicenseGPL-3
Version0.0.4
URL https://github.com/AustralianAntarcticDivision/rbgm/ http://atlantis.cmar.csiro.au/
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("rbgm")

Man pages

bgmfile: Read BGM
build_dz: Build Atlantis dz Values
nodeSpatial: Vertices as Spatial points.
rbgm-package: Utilities for BGM files for Atlantis
rbgm-Spatial: Convert to Spatial

Functions

bgmfile Man page Source code
boundarySpatial Man page Source code
boxSpatial Man page Source code
boxparse Source code
build_dz Man page Source code
densifymindist Source code
faceSpatial Man page Source code
facedataparse Source code
facevertsparse Source code
fixproj Source code
grepItems Source code
i_parse Source code
nodeSpatial Man page Source code
pointSpatial Man page Source code
prependplus Source code
rbgm-package Man page
read.faces Source code
sptableBox Source code
sptableFace Source code

Files

inst
inst/doc
inst/doc/BGM_Spatial.R
inst/doc/BGMfiles.Rmd
inst/doc/BGM_examplefiles.R
inst/doc/BGMfiles.html
inst/doc/BGM_examplefiles.Rmd
inst/doc/BGM_examplefiles.html
inst/doc/BGMfiles.R
inst/doc/BGM_Spatial.Rmd
inst/doc/BGM_Spatial.html
tests
tests/testthat.R
tests/testthat
tests/testthat/test-round-trip.R
tests/testthat/test-parse.R
tests/testthat/test-basic-bgm.R
tests/testthat/test-read.R
NAMESPACE
NEWS.md
R
R/readfaces.r
R/rbgm.R
R/utils.r
R/Spatial.r
R/bgmfile.r
R/parse.r
vignettes
vignettes/BGMfiles.Rmd
vignettes/BGM_examplefiles.Rmd
vignettes/BGM_Spatial.Rmd
README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/rbgm-package.Rd
man/rbgm-Spatial.Rd
man/nodeSpatial.Rd
man/build_dz.Rd
man/bgmfile.Rd
rbgm documentation built on May 19, 2017, 9:36 p.m.