Man pages for rbi
Interface to 'LibBi'
| absolute_path | Absolute Path |
| add_block | Add a block to a LibBi model |
| assert_files | Check that a LibBi wrapper has valid output |
| attach_data | Attach a new file or data set to a 'libbi' object |
| bi_contents | Bi contents |
| bi_dim_len | NetCDF dimension length |
| bi_file_summary | NetCDF File Summary |
| bi_generate_dataset | Bi Generate Dataset |
| bi_model | Bi Model |
| bi_open | Bi Open |
| bi_read | Bi Read |
| bi_write | Create (e.g., init or observation) files for LibBi |
| check_sparse_var | Check if a variable is sparse |
| clean_model | Strip model code to its bare bones |
| create_coord_var | Create a coordinate variable |
| create_working_folder | Internal function to create a temporary working folder |
| enable_outputs | Enable outputting variables in a 'bi_model' |
| Equals.bi_model | Check if two models are equal |
| Extract_assign.bi_model | Subset and replace model lines |
| Extract.bi_model | Subset model lines |
| extract_sample | Extract a sample from a 'LibBi' run. |
| filter | Using the LibBi wrapper to filter |
| find_block | Find a block in a LibBi model |
| fix | Fix noise term, state or parameter of a libbi model |
| flatten | Flatten list of data frames This function takes a list of... |
| generate_dataset | Generate Dataset |
| get_block | Get the contents of a block in a LibBi model |
| get_const | Get constants in a LibBi model |
| get_dims | Get dimensions in a LibBi model |
| get_name | Get the name of a bi model |
| get_traces | Get the parameter traces |
| insert_lines | Insert lines in a LibBi model |
| installed_libbi_version | Get the LibBi version |
| is_empty | Check if a model is empty |
| join | Join multiple 'libbi' objects |
| libbi | LibBi Wrapper |
| locate_libbi | Find the libbi executable |
| logLik | Using the LibBi wrapper to logLik |
| optimise | Using the LibBi wrapper to optimise |
| option_list | Convert string to option list |
| option_string | Convert Options |
| predict | Using the LibBi wrapper to predict |
| Print the lines of a LibBi model | |
| print_log | Print the log file a 'libbi' object |
| propose_prior | Propose from the prior in a libbi model |
| read_libbi | Read results of a 'LibBi' run from an RDS file or from a... |
| remove_lines | Remove line(s) and/or block(s) in a libbi model |
| remove_vars | Remove variables |
| replace_all | Replace all instances of a string with another in a model |
| rewrite | Using the LibBi wrapper to rewrite |
| run | Using the LibBi wrapper to launch LibBi |
| sample | Using the LibBi wrapper to sample |
| sample_obs | Sample observations from a LibBi model that has been run |
| save_libbi | Write results of a 'LibBi' run to an RDS file |
| set_name | Set the name of a bi model |
| simulate | Using the LibBi wrapper to simulate |
| summary | Print summary information about a 'libbi' object |
| to_input | Convert variables into inputs |
| Unequals.bi_model | Check if two models are unequal |
| update | Update a libbi object |
| var_names | Get variable names in a LibBi model |
| write_model | Writes a bi model to a file. |
