rbiouml: Interact with BioUML Server

Functions for connecting to BioUML server, querying BioUML repository and launching BioUML analyses.

Author
Ivan Yevshin [aut, cre], Tagir Valeev [aut]
Date of publication
2015-09-25 08:30:33
Maintainer
Ivan Yevshin <ivan@dote.ru>
License
GPL-2
Version
1.7

View on CRAN

Man pages

biouml.analysis
Run BioUML analysis
biouml.analysis.list
List available BioUML analyses
biouml.analysis.parameters
Get BioUML analysis parameters
biouml.export
Export data from BioUML
biouml.exporters
List BioUML exporters
biouml.export.parameters
Get BioUML export parameters
biouml.get
Fetch BioUML table
biouml.import
Import file to BioUML
biouml.importers
List BioUML importers
biouml.import.parameters
Get BioUML import parameters
biouml.job.info
Fetch BioUML job info
biouml.job.wait
Wait for job completion
biouml.login
Login to BioUML server
biouml.logout
Logout from BioUML server
biouml.ls
List data elements by path
biouml.put
Put data.frame to BioUML repository
biouml.workflow
Run BioUML workflow

Files in this package

rbiouml
rbiouml/inst
rbiouml/inst/extdata
rbiouml/inst/extdata/HIV-1.fa
rbiouml/inst/doc
rbiouml/inst/doc/rbiouml.pdf
rbiouml/inst/doc/rbiouml.Rnw
rbiouml/inst/doc/rbiouml.R
rbiouml/NAMESPACE
rbiouml/R
rbiouml/R/biouml.R
rbiouml/vignettes
rbiouml/vignettes/rbiouml.Rnw
rbiouml/MD5
rbiouml/build
rbiouml/build/vignette.rds
rbiouml/DESCRIPTION
rbiouml/ChangeLog
rbiouml/man
rbiouml/man/biouml.login.Rd
rbiouml/man/biouml.import.parameters.Rd
rbiouml/man/biouml.ls.Rd
rbiouml/man/biouml.export.Rd
rbiouml/man/biouml.analysis.Rd
rbiouml/man/biouml.logout.Rd
rbiouml/man/biouml.workflow.Rd
rbiouml/man/biouml.exporters.Rd
rbiouml/man/biouml.job.info.Rd
rbiouml/man/biouml.get.Rd
rbiouml/man/biouml.job.wait.Rd
rbiouml/man/biouml.analysis.list.Rd
rbiouml/man/biouml.put.Rd
rbiouml/man/biouml.import.Rd
rbiouml/man/biouml.analysis.parameters.Rd
rbiouml/man/biouml.export.parameters.Rd
rbiouml/man/biouml.importers.Rd