rbiouml: Interact with BioUML Server
Version 1.7

Functions for connecting to BioUML server, querying BioUML repository and launching BioUML analyses.

AuthorIvan Yevshin [aut, cre], Tagir Valeev [aut]
Date of publication2015-09-25 08:30:33
MaintainerIvan Yevshin <ivan@dote.ru>
LicenseGPL-2
Version1.7
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("rbiouml")

Popular man pages

biouml.analysis: Run BioUML analysis
biouml.export: Export data from BioUML
biouml.exporters: List BioUML exporters
biouml.importers: List BioUML importers
biouml.job.info: Fetch BioUML job info
biouml.login: Login to BioUML server
biouml.logout: Logout from BioUML server
See all...

All man pages Function index File listing

Man pages

biouml.analysis: Run BioUML analysis
biouml.analysis.list: List available BioUML analyses
biouml.analysis.parameters: Get BioUML analysis parameters
biouml.export: Export data from BioUML
biouml.exporters: List BioUML exporters
biouml.export.parameters: Get BioUML export parameters
biouml.get: Fetch BioUML table
biouml.import: Import file to BioUML
biouml.importers: List BioUML importers
biouml.import.parameters: Get BioUML import parameters
biouml.job.info: Fetch BioUML job info
biouml.job.wait: Wait for job completion
biouml.login: Login to BioUML server
biouml.logout: Logout from BioUML server
biouml.ls: List data elements by path
biouml.put: Put data.frame to BioUML repository
biouml.workflow: Run BioUML workflow

Functions

as.name.value Source code
as.tree Source code
biouml.analysis Man page Source code
biouml.analysis.list Man page Source code
biouml.analysis.parameters Man page Source code
biouml.export Man page Source code
biouml.export.parameters Man page Source code
biouml.exporters Man page Source code
biouml.get Man page Source code
biouml.import Man page Source code
biouml.import.parameters Man page Source code
biouml.importers Man page Source code
biouml.job.info Man page Source code
biouml.job.wait Man page Source code
biouml.login Man page Source code
biouml.logout Man page Source code
biouml.ls Man page Source code
biouml.parameters Source code
biouml.put Man page Source code
biouml.query Source code
biouml.reconnect Source code
biouml.workflow Man page Source code
getConnection Source code
list.to.data.frame.fast Source code
next.job.id Source code
queryJSON Source code

Files

inst
inst/extdata
inst/extdata/HIV-1.fa
inst/doc
inst/doc/rbiouml.pdf
inst/doc/rbiouml.Rnw
inst/doc/rbiouml.R
NAMESPACE
R
R/biouml.R
vignettes
vignettes/rbiouml.Rnw
MD5
build
build/vignette.rds
DESCRIPTION
ChangeLog
man
man/biouml.login.Rd
man/biouml.import.parameters.Rd
man/biouml.ls.Rd
man/biouml.export.Rd
man/biouml.analysis.Rd
man/biouml.logout.Rd
man/biouml.workflow.Rd
man/biouml.exporters.Rd
man/biouml.job.info.Rd
man/biouml.get.Rd
man/biouml.job.wait.Rd
man/biouml.analysis.list.Rd
man/biouml.put.Rd
man/biouml.import.Rd
man/biouml.analysis.parameters.Rd
man/biouml.export.parameters.Rd
man/biouml.importers.Rd
rbiouml documentation built on May 19, 2017, 2:15 p.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.