NEWS.md

In rcontroll: Individual-Based Forest Growth Simulator 'TROLL'

rcontroll 0.1.0.9004

• merging and cleaning before CRAN fix

rcontroll 0.1.0.9003

• TROLL version 3.1.8 following discussion with IM, updating treefall time normalisation and carbon starvation to match TROLL4, a clean merge with main and dev will be needed

rcontroll 0.1.1.9002

• lidr fig

rcontroll 0.1.1.9001

• extended documentation following review

rcontroll 0.1.0.9065

• new stack in tmp fix & TROLLV3_output update

rcontroll 0.1.0.9064

• improving memory usage

rcontroll 0.1.0.9063

• fixed stack with batch foreach

rcontroll 0.1.0.9062

• fixes after CRAN 3rd submission (see cran-comments.md)

rcontroll 0.1.0.9062

• fixes after CRAN 2nd submission (see cran-comments.md)

rcontroll 0.1.0.9064

• replace sprintf to snprintf with sizeof() argument

rcontroll 0.1.0.9063

• removing terra reading NETcdf from climate vignette in macOS

rcontroll 0.1.0.9062

• clang support
• REMINDER use valgrind for segfault : R -d "valgrind -s" -e 'rcontroll::troll(name = "test",global = rcontroll::generate_parameters(cols = 100, rows = 100,iterperyear = 12, nbiter = 12 * 1),species = rcontroll::TROLLv3_species,climate = rcontroll::TROLLv3_climatedaytime12,daily = rcontroll::TROLLv3_daytimevar,verbose = TRUE)'

rcontroll 0.1.0.9061

• fixed NEWS after CRAN 1st submission
• removing dubious URL after CRAN 1st submission

rcontroll 0.1.0.9060

• fixing win-build notes (wrong link & typo)
• dontrun troll example because >10s
• reducing era5 data in climate vignette to reduce package size (\<100MB)
• removing worflow spatial figure to reduce size

rcontroll 0.1.0.9059

• cover fix 1
• removed RcppGSL
• badges added
• climate vignette typos

rcontroll 0.1.0.9058

• including PR #39
• Guillaume's dev (configure, seed, lidar iter 0, CI)
• Reject inmemory option
• Cleaning code
• Adding test (covr>80%)
• Fixing era5 new version
• Adding era5 extdata
• Compiling climate vignette

rcontroll 0.1.0.9057

• dos2unix whole files
• add inmemory option to load simulation(s) results
• check consistency between Niter (global parameter) & iter_pointcloud_generation (lidar parameters)
• checked url in documents

rcontroll 0.1.0.9056

• Add compilation configure files with gsl-config and download on Wondows OS (configure/configure.win, makevars.in, cleanup/cleanup)
• Add chmod +x to configure & cleanup ex: git update-index --chmod=+x configure
• Add Rseed setup to connect set.seed with gsl seed for enhanced reproductibility
• Set hack to simulate at t = 0 lidar
• remove license from build
• update GA check
• remove GA covr
• update description title
• code cleaning with lintr::lint_package & styler::style_pkg

rcontroll 0.1.0.9055

• LICENSE.md

rcontroll 0.1.0.9054

• lidr figure, updated README & doc, updated version

rcontroll 0.1.0.9053

• Fabian TROLL v1.3.7 fixes las closing, no las automatic creation, leafflush bug
• Fixing the NULL character to "" for TROLL cpp

rcontroll 0.1.0.9052

• lidar backend:
• las attribute as list(lidR::LAS) for trollsim & trollstack
• lidR in DESCRIPTION
• get_chm methods
• print methods
• autoplot methods
• load_output and load_stack

rcontroll 0.1.0.9051

• Guillaume cleaned frontend for lidar

rcontroll 0.1.0.9050

• Update TROLL to 3.1.6 & add lidar generation parameters

rcontroll 0.1.0.9049

• fixed and & or operands in cpp for windows-latest (release)

rcontroll 0.1.0.9048

• methods get_forest & update_parameters

rcontroll 0.1.0.9047

• autogif v1

rcontroll 0.1.0.9046

• TROLL 1.3.3, TROLL.version() & autogif begins

rcontroll 0.1.0.9044

• merge @gsalzet rcpp_gsl

rcontroll 0.1.0.9043

• Add import GSL and Add CI on GH Actions multi-arch

rcontroll 0.1.0.9042

• Add CI on GH Actions multi-arch

rcontroll 0.1.0.9041

• Add CI on GH Actions ubuntu alone

rcontroll 0.1.0.9040

• Add configure.win, cleanup.win and Makevars.win files

rcontroll 0.1.0.9039

• Change permission access of configure file

rcontroll 0.1.0.9038

• Update GH actions

rcontroll 0.1.0.9037

• add configure file to detect GSL install
• reviewed english

rcontroll 0.1.0.9036

• autoplot v2

rcontroll 0.1.0.9035

• Fabian's cleaned CPP

rcontroll 0.1.0.9034

• using TROLL child for fake parralelisation
• waiting for Fabian's cleaned CPP

rcontroll 0.1.0.9033

• fabain's neww cpp
• pkgdown on gh-pages branch

rcontroll 0.1.0.9032

• pkgdown init

rcontroll 0.1.0.9031

• reviewed doc, vignettes, & README

rcontroll 0.1.0.9030

• fixed tests

rcontroll 0.1.0.9029

• reduced TROLLV3_output
• fixed CRAN check
• added CRAN comments

rcontroll 0.1.0.9028

• TROLLV3_output for exs and tests
• autoplot upgraded
• troll with fake parralelisation for R child runs of TROLL

rcontroll 0.1.0.9027

• test reprex, news to be filled

rcontroll 0.1.0.9026

• integration of TROLL main_v3.1_rcpp.cpp with corresponding new parameters
• from data to be explored and values to be tested

rcontroll 0.1.0.9025

• doc & vignette

rcontroll 0.1.0.9024

• adding tests and fixing check

rcontroll 0.1.0.9024

• adding forest_path to work with FromData but is not correctly programmed in the cpp

rcontroll 0.1.0.9023

• cout and cerr to Rcout and Rcerr
• adding a verbose to troll and stack

rcontroll 0.1.0.9022

• adding OUTPUT_reduced, FromData and NONRANDOM to general parameters with a lot of consequent changes
• adding a thinning parameter
• simplified vignette

rcontroll 0.1.0.9021

• simplifying trollsim and trollstack to one

rcontroll 0.1.0.9020

• seamless integration of trollCpp thanks to Rcpp !
• updated troll.R & load_output
• rm inst/troll & compile troll
• rm climate365 & soil
• vignette calibration & Schmitt2020
• rm doc2word.sh

rcontroll 0.1.0.9019

• initiating all vignettes
• doc2word.sh for sharing on gdrive
• TROLL vignette

rcontroll 0.1.0.9018

• add progress bar in stack function with doSNOW package
• R CMD check done: dev branch

rcontroll 0.1.0.9017

• corrected autoplot functions #11 #16
• first attempt 1000 years vignette #13

rcontroll 0.1.0.9016

• generate_parameters #12

rcontroll 0.1.0.9015

• load_stack #9, print, show, summary stack #10, autoplot.stack #16, is.stack

rcontroll 0.1.0.9014

• stack #8

rcontroll 0.1.0.9013

• trollstack #6

rcontroll 0.1.0.9012

• autoplot.trollsim #11

rcontroll 0.1.0.9011

• 2 trollsim:

  • parameters as a named vector
  • forest and random as parameters
  • final_pattern
  • architecture for stacks

• 3 troll:

  • work with all binaries
  • forest and random parameters
  • final_pattern

• 4 load_output:

  • parameters as a named vector
  • forest and random as parameters
  • final_pattern
  • consolidated reduced outputs

rcontroll 0.1.0.9010

• compile_troll and unix binaries #1

rcontroll 0.1.0.9009

• troll and load_output for all trollsimclasses #3 & #5

rcontroll 0.1.0.9008

• trollsimclasses #2

rcontroll 0.1.0.9007

• TROLL binaries for windows #1

rcontroll 0.1.0.9006

• load_output read all, consolidated output for TROLL_full #5
• plot_ecosystem base plot for TROLL_full #11
• print, summary # 10
• troll binary path, tmp, unlink for TROLL_full #3
• trollsim consolidated outputs for TROLL_full #2
• zzz.R tmp
• test-troll working
• update workflow.Rmd

rcontroll 0.1.0.9005

• tidyverse style guide #14

rcontroll 0.1.0.9004

• TROLL binaries for unix #1

rcontroll 0.1.0.9003

• opened dev branch
• opened documentation for data #10

rcontroll 0.1.0.9002

• opened old branch and cleaned main branch

rcontroll 0.1.0.9001

• relaunch of the package

rcontroll documentation built on Sept. 30, 2024, 9:13 a.m.