plot.rdaccahp: Plot for a 'rdacca.hp' object
In rdacca.hp: Hierarchical and Variation Partitioning for Canonical Analysis

View source: R/plot.rdaccahp.r

plot.rdaccahp

R Documentation

Plot for a `rdacca.hp` object

Description

Plot for a rdacca.hp object

Usage

## S3 method for class 'rdaccahp'
plot(x, plot.perc = FALSE, color = NULL, ...)

Arguments

`x`	A `rdacca.hp` object.
`plot.perc`	Logical;if TRUE, the bar plot (based on ggplot2 package) of the percentage to individual effects of variables or groups towards total explained variation, the default is FALSE to show plot with original individual effects.
`color`	Color of variables.
`...`	unused

Value

a ggplot object

Author(s)

Jiangshan Lai lai@njfu.edu.cn

Examples

library(vegan)
data(mite)
data(mite.env)
mite.hel <- decostand(mite, "hellinger")
avc<-rdacca.hp(mite.hel,mite.env,method="RDA",type="adjR2")
plot(avc)
plot(avc, plot.perc=TRUE)
avc<-rdacca.hp(mite.hel,mite.env[,1:3],method="RDA",type="adjR2",var.part=TRUE)
plot(avc,color = c("#8DD3C7", "#FFFFB3", "#BEBADA"))

rdacca.hp documentation built on Sept. 11, 2024, 8:05 p.m.