plot_lgcp_dat: Extract data from an lgcpReal object

In realTimeSurv: Real Time Disease Surveillance Using Geospatial Statistical Modelling

Description

Helper function to create plotting data from an lgcpReal object

Usage

plot_lgcp_dat(
  samps,
  grid.data,
  lg,
  nchains,
  idx.mapping = NULL,
  cellwidth = 0.005,
  covariates,
  plotlag = 0,
  data.out = FALSE
)

Arguments

samps	MCMC samples extracted from lgcpReal object
grid.data	Grid used for sampling and plotting
lg	lgcpReal model fit
nchains	Number of MCMC chains in model fit
idx.mapping	Matrix specifying plot order of grid cells
cellwidth	Cellwidth of the grid
covariates	SpatialPolygonsDataFrame with the original covariate data
plotlag	Laglength for the plot
data.out	Logical indicating whether to return data frame with only plotting data (FALSE) or a list containing each predicted model subcomponent (TRUE)

Value

A data.frame with model predictions across the computation grid used in the plotting functions in this package.

realTimeSurv documentation built on May 18, 2021, 9:07 a.m.