rentrez: Entrez in R

Provides an R interface to the NCBI's EUtils API allowing users to search databases like GenBank and PubMed, process the results of those searches and pull data into their R sessions.

Author
David Winter [aut, cre], Scott Chamberlain [ctb], Han Guangchun [ctb]
Date of publication
2016-10-26 10:37:53
Maintainer
David Winter <david.winter@gmail.com>
License
MIT + file LICENSE
Version
1.0.4
URLs

View on CRAN

Man pages

entrez_citmatch
Fetch pubmed ids matching specially formatted citation...
entrez_db_links
List available links for records from a given NCBI database
entrez_dbs
List databases available from the NCBI
entrez_db_searchable
List available search fields for a given database
entrez_db_summary
Retrieve summary information about an NCBI database
entrez_fetch
Download data from NCBI databases
entrez_global_query
Find the number of records that match a given term across all...
entrez_info
Get information about EUtils databases
entrez_link
Get links to datasets related to records from an NCBI...
entrez_post
Post IDs to Eutils for later use
entrez_search
Search the NCBI databases using EUtils
entrez_summary
Get summaries of objects in NCBI datasets from a unique ID
extract_from_esummary
Extract elements from a list of esummary records
linkout_urls
Extract URLs from an elink object
parse_pubmed_xml
Summarize an XML record from pubmed.
rentrez
rentrez

Files in this package

rentrez
rentrez/inst
rentrez/inst/doc
rentrez/inst/doc/rentrez_tutorial.R
rentrez/inst/doc/rentrez_tutorial.html
rentrez/inst/doc/rentrez_tutorial.Rmd
rentrez/tests
rentrez/tests/testthat
rentrez/tests/testthat/test_search.r
rentrez/tests/testthat/test_query.r
rentrez/tests/testthat/test_citmatch.r
rentrez/tests/testthat/test_summary.r
rentrez/tests/testthat/test_post.r
rentrez/tests/testthat/test_docs.r
rentrez/tests/testthat/test_net.r
rentrez/tests/testthat/test_httr.r
rentrez/tests/testthat/test_webenv.r
rentrez/tests/testthat/test_parse.r
rentrez/tests/testthat/test_fetch.r
rentrez/tests/testthat/test_link.r
rentrez/tests/testthat/test_info.r
rentrez/tests/test-all.R
rentrez/NAMESPACE
rentrez/NEWS
rentrez/R
rentrez/R/entrez_global_query.r
rentrez/R/base.r
rentrez/R/entrez_citmatch.r
rentrez/R/parse_pubmed_xml.r
rentrez/R/entrez_search.r
rentrez/R/entrez_info.r
rentrez/R/help.r
rentrez/R/entrez_link.r
rentrez/R/entrez_fetch.r
rentrez/R/entrez_summary.r
rentrez/R/entrez_post.r
rentrez/vignettes
rentrez/vignettes/rentrez_tutorial.Rmd
rentrez/MD5
rentrez/build
rentrez/build/vignette.rds
rentrez/DESCRIPTION
rentrez/man
rentrez/man/entrez_dbs.Rd
rentrez/man/entrez_db_searchable.Rd
rentrez/man/entrez_db_links.Rd
rentrez/man/entrez_link.Rd
rentrez/man/entrez_post.Rd
rentrez/man/entrez_summary.Rd
rentrez/man/entrez_db_summary.Rd
rentrez/man/parse_pubmed_xml.Rd
rentrez/man/entrez_info.Rd
rentrez/man/linkout_urls.Rd
rentrez/man/entrez_fetch.Rd
rentrez/man/rentrez.Rd
rentrez/man/entrez_global_query.Rd
rentrez/man/entrez_search.Rd
rentrez/man/extract_from_esummary.Rd
rentrez/man/entrez_citmatch.Rd
rentrez/LICENSE