rexpokit: R wrappers for EXPOKIT; other matrix functions

This package wraps some of the matrix exponentiation utilities from EXPOKIT (http://www.maths.uq.edu.au/expokit/), a FORTRAN library that is widely recommended for matrix exponentiation (Sidje RB, 1998. "Expokit: A Software Package for Computing Matrix Exponentials." ACM Trans. Math. Softw. 24(1): 130-156). EXPOKIT includes functions for exponentiating both small, dense matrices, and large, sparse matrices (in sparse matrices, most of the cells have value 0). Rapid matrix exponentiation is useful in phylogenetics when we have a large number of states (as we do when we are inferring the history of transitions between the possible geographic ranges of a species), but is probably useful in other ways as well.

AuthorNicholas J. Matzke [aut, cre, cph], Roger B. Sidje [aut, cph]
Date of publication2013-07-15 07:25:20
MaintainerNicholas J. Matzke <matzke@berkeley.edu>
LicenseGPL (>= 2)
Version0.24.1
http://phylo.wikidot.com/rexpokit

View on CRAN

Files in this package

rexpokit
rexpokit/MD5
rexpokit/src
rexpokit/src/rcpp_module.cpp
rexpokit/src/my_matexp.f
rexpokit/src/my_expokit.f
rexpokit/src/mataid.f
rexpokit/src/lapack.f
rexpokit/src/expokit_wrappers.cpp
rexpokit/src/clock.f
rexpokit/src/blas_mod.f
rexpokit/src/Makevars.win
rexpokit/src/Makevars
rexpokit/man
rexpokit/man/row_allzero_TF.Rd rexpokit/man/rexpokit-package.Rd rexpokit/man/mat2coo_forloop.Rd rexpokit/man/mat2coo.Rd rexpokit/man/findrows_w_all_zeros.Rd rexpokit/man/fermat.test.Rd rexpokit/man/expokit_wrapalldmexpv_tvals.Rd rexpokit/man/expokit_wrapalldgexpv_tvals.Rd rexpokit/man/expokit_mydmexpv_wrapper.Rd rexpokit/man/expokit_mydgexpv_wrapper.Rd rexpokit/man/expokit_dmexpv_wrapper.Rd rexpokit/man/expokit_dmexpv_Qmat.Rd rexpokit/man/expokit_dgpadm_Qmat.Rd rexpokit/man/expokit_dgexpv_wrapper.Rd rexpokit/man/expokit_dgexpv_Qmat.Rd rexpokit/man/coo2mat.Rd rexpokit/man/SparseM_coo_to_REXPOKIT_coo.Rd
rexpokit/inst
rexpokit/inst/notes
rexpokit/inst/notes/expokit_copyright.txt
rexpokit/inst/notes/EXPOKIT_For_Dummies_notes_v1.txt
rexpokit/inst/REFERENCES.bib
rexpokit/inst/CITATION
rexpokit/R
rexpokit/R/rexpokit_v1.R rexpokit/R/rexpokit-package.R rexpokit/R/fermat.R
rexpokit/NEWS
rexpokit/NAMESPACE
rexpokit/DESCRIPTION

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

All documentation is copyright its authors; we didn't write any of that.