rfUtilities: Random Forests Model Selection and Performance Evaluation

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Utilities for Random Forest model selection, class balance correction, significance test, cross validation and partial dependency plots.

Author
Jeffrey S. Evans [cre, aut], Melanie A. Murphy [ctb]
Date of publication
2016-04-27 13:31:07
Maintainer
Jeffrey S. Evans <jeffrey_evans@tnc.org>
License
GPL-3
Version
2.0-0
URLs

View on CRAN

Man pages

accuracy
Accuracy
multi.collinear
Multi-collinearity test
occurrence.threshold
Test occurrence probability thresholds
plot.occurrence.threshold
Plot occurrence thresholds
plot.rf.cv
Plot random forests cross-validation
plot.rf.modelSel
Plot random forests model selection
plot.significance
Plot random forests significance
print.accuracy
Print accuracy
print.occurrence.threshold
Print occurrence.threshold
print.rf.cv
Print random forests cross-validation
print.rf.modelSel
Print random forests model selection
print.significance
Print significance
rf.classBalance
Random Forest Class Balance (Zero Inflation Correction) Model
rf.class.sensitivity
Random Forests class-level sensitivity analysis
rf.crossValidation
Random Forest Classification Model Cross-validation
rf.imp.freq
Random Forest variable selection frequency
rf.modelSel
Random Forest Model Selection
rf.partial.ci
Random Forests regression partial dependency plot with...
rf.partial.prob
Random Forest probability scaled partial dependency plots
rf.regression.fit
Random Forest fit statistics
rf.significance
Random Forest model significance test
rfu.news
rfUtilities news
summary.accuracy
Summarizing accuracy
summary.occurrence.threshold
Summarizing occurrence.threshold
summary.rf.cv
Summarizing cross-validation
summary.rf.modelSel
Summarizing random forests model selection
summary.significance
Summarizing significance

Files in this package

rfUtilities
rfUtilities/inst
rfUtilities/inst/CITATION
rfUtilities/inst/NEWS
rfUtilities/NAMESPACE
rfUtilities/R
rfUtilities/R/print.occurrence.threshold.R
rfUtilities/R/summary.rf.modelSel.R
rfUtilities/R/rf.classBalance.R
rfUtilities/R/print.rf.modelSel.R
rfUtilities/R/summary.occurrence.threshold.R
rfUtilities/R/rf.class.sensitivity.R
rfUtilities/R/rf.imp.freq.R
rfUtilities/R/plot.rf.modelSel.R
rfUtilities/R/summary.rf.cv.R
rfUtilities/R/print.rf.cv.R
rfUtilities/R/print.rf.fit.R
rfUtilities/R/plot.rf.cv.R
rfUtilities/R/plot.occurrence.threshold.R
rfUtilities/R/rf.partial.ci.R
rfUtilities/R/summary.significance.R
rfUtilities/R/occurrence.threshold.R
rfUtilities/R/plot.significance.R
rfUtilities/R/summary.accuracy.R
rfUtilities/R/print.significance.R
rfUtilities/R/rf.significance.R
rfUtilities/R/rf.partial.prob.R
rfUtilities/R/rf.modelSel.R
rfUtilities/R/accuracy.R
rfUtilities/R/multi.collinear.R
rfUtilities/R/zzz.R
rfUtilities/R/rf.regression.fit.R
rfUtilities/R/rfu.news.R
rfUtilities/R/rf.crossValidation.R
rfUtilities/R/print.accuracy.R
rfUtilities/MD5
rfUtilities/DESCRIPTION
rfUtilities/man
rfUtilities/man/rf.imp.freq.Rd
rfUtilities/man/accuracy.Rd
rfUtilities/man/print.rf.modelSel.Rd
rfUtilities/man/print.rf.cv.Rd
rfUtilities/man/rf.crossValidation.Rd
rfUtilities/man/occurrence.threshold.Rd
rfUtilities/man/rf.modelSel.Rd
rfUtilities/man/summary.accuracy.Rd
rfUtilities/man/plot.occurrence.threshold.Rd
rfUtilities/man/summary.significance.Rd
rfUtilities/man/summary.rf.modelSel.Rd
rfUtilities/man/summary.occurrence.threshold.Rd
rfUtilities/man/print.significance.Rd
rfUtilities/man/plot.significance.Rd
rfUtilities/man/print.accuracy.Rd
rfUtilities/man/print.occurrence.threshold.Rd
rfUtilities/man/summary.rf.cv.Rd
rfUtilities/man/rf.partial.ci.Rd
rfUtilities/man/rf.significance.Rd
rfUtilities/man/plot.rf.cv.Rd
rfUtilities/man/rf.classBalance.Rd
rfUtilities/man/multi.collinear.Rd
rfUtilities/man/plot.rf.modelSel.Rd
rfUtilities/man/rf.regression.fit.Rd
rfUtilities/man/rf.class.sensitivity.Rd
rfUtilities/man/rfu.news.Rd
rfUtilities/man/rf.partial.prob.Rd