plotVI2 | R Documentation |
creates barplots for variable importances including permutation scores
plotVI2(VIbench, decreasing = TRUE, with_MDA = TRUE, ordered_by = "inbag", score = "Gini Importance", horizontal = TRUE, fill = "order", labelSize = 10, nrow = 3)
VIbench |
matrix with importance scores as returned by GiniImportanceForest |
decreasing |
which direction to sort |
with_MDA |
also visualize mean decrease in accuracy (permutation importance) |
ordered_by |
how to order |
score |
type of importance score: Gini, MIA,.. |
horizontal |
horizontal barplot instead of vertical ? |
fill |
fill style for barplots; use e.g. shQuote("blue") to pass color strings |
labelSize |
size of axis labels |
nrow |
number of rows of ploztz arrangement |
Markus Loecher <Markus.Loecher@gmail.com>
data("titanic_train", package = "rfVarImpOOB", envir = environment()) set.seed(123) ranRows=sample(nrow(titanic_train), 300) data=titanic_train[ranRows,] RF = randomForest::randomForest(formula = Survived ~ Sex + Pclass + PassengerId, data=data, ntree=5,importance=TRUE, mtry=3,keep.inbag=TRUE, nodesize = 20) data$Survived = as.numeric(data$Survived)-1 VI_Titanic = GiniImportanceForest(RF, data,ylab="Survived") plotVI2(VI_Titanic,decreasing = TRUE)
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