Description Usage Arguments Value Examples
Read a file created through the '—-domtblout' option
1 |
file |
Filename |
data.frame
1 2 | file <- system.file('extdata', 'example.domtblout.txt', package='rhmmer')
read_domtblout(file)
|
# A tibble: 70 x 23
domain_name domain_accession domain_len query_name query_accession qlen
<chr> <chr> <int> <chr> <chr> <int>
1 Rer1 PF03248.12 171 AT2G18240… - 221
2 Rer1 PF03248.12 171 AT2G18240… - 221
3 DUF4220 PF13968.5 352 AT5G45530… - 798
4 DUF594 PF04578.12 55 AT5G45530… - 798
5 DEAD PF00270.28 176 AT1G27880… - 890
6 Helicase_C PF00271.30 111 AT1G27880… - 890
7 Helicase_C PF00271.30 111 AT1G27880… - 890
8 ResIII PF04851.14 171 AT1G27880… - 890
9 ResIII PF04851.14 171 AT1G27880… - 890
10 TIR PF01582.19 176 AT1G56520… - 897
# … with 60 more rows, and 17 more variables: sequence_evalue <dbl>,
# sequence_score <dbl>, sequence_bias <dbl>, domain_N <int>, domain_of <int>,
# domain_cevalue <dbl>, domain_ievalue <dbl>, domain_score <dbl>,
# domain_bias <dbl>, hmm_from <int>, hmm_to <int>, ali_from <int>,
# ali_to <int>, env_from <int>, env_to <int>, acc <dbl>, description <chr>
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.