Man pages for ribiosIO
Input/Output Utilities of the 'ribios' Suite
| as.matrix.GctMatrix | Coerce a GctMatrix object into a matrix |
| as_numeric_matrix | Transform a data.frame to a numeric matrix without characters... |
| cbindGct | Column bind (cbind) two GctMatrix objects |
| find_ampliseq | Find and read-in AmpliSeq files |
| gctDesc | Retrieve feature (row) descriptions from a GctMatrix... |
| GctMatrix | Create a GctMatrix object |
| gctMatrix2longdf | Convert a GctMatrix into a long data frame |
| getDataDir | Get the data directory |
| iofile | Get file names for data import/export |
| is_factor_file | Check if a file encodes a factor |
| isGctFile | Test a file is a GCT file or not |
| loadFile | Attempt to load a binary RData file |
| loadObject | Load an object by its name from a RData file |
| loadObjectInEnv | Load objects from a RData file and return them in an... |
| loadRDS | Load an object from a RDS file and returns a logical flag |
| longdf2gctMatrix | Convert a long data.frame into a GctMatrix |
| optional_suppress_warning | Supress warning optionally |
| print.GctMatrix | Print method for GctMatrix object |
| read_ampliseq_bedcovgct | Read bedcov output of AmpliSeq amplicons and convert them to... |
| read_annotated_ampliseq_amplicons | Read AmpliSeq amplicon informaiton from an annotated BED file |
| read_bed | Read a BED file |
| read_biokit_exprs | qRead BioKit expression file into a data.frame |
| read_chip | Read CHIP file |
| read_david | Read tab-delimited result files from DAVID Bioinformatics... |
| read_exprs_matrix | Read an expression matrix from file |
| read_factor | Read in a factor writtin in the CLS format |
| read_fasta | Read (write) FASTA sequences into (from) named character... |
| read_gct_matrix | Calling C routine to read GCT file into a matrix |
| read_gmt_dataframe | Read gene-sets in a GMT file into a data.frame |
| read_gmt_list | Calling C routine to read GMT file into a list |
| read_illumina_sampleSheet | Read the Data block of Illumina sample sheet as data.frame |
| readMatrix | Read in numeric matrix from tab-delimited format written by... |
| read_pheno | Read pheno data from CLS or tab-delimited file |
| read_raw_ampliseq_amplicons | Read AmpliSeq amplicon informaiton from an raw BED file |
| readTable | Read in data.frame from tab-delimited format written by... |
| read_trimmed_lines | Read lines, thereby trimming empty spaces around the strings... |
| ribiosIO-package | ribiosIO: Input/Output Utilities of the 'ribios' Suite |
| setDataDir | Set the data directory |
| strList2DataFrame | Format a string list into a data.frame |
| sub-.GctMatrix | Subsetting for GctMatrix |
| write_annotated_ampliseq_amplicons | Write AmpliSeq amplicon informaiton into an annotated BED... |
| write_factor | Write a factor in the CLS format |
| write_gct | Write matrix in GCT file format |
| write_gmt | Write a list of gene sets into a GMT file |
| writeMatrix | Export matrix into a commonly used tab-delimited format... |
| writeMatrix.tableList | Write a list of data.frames (tables) into file with... |
| writeStrList | Write a list of strings in a tab-delimited file |
| write.tableList | Write a list of data.frames (tables) into files |
