read_bed: Read a BED file

In ribiosIO: Input/Output Utilities of the 'ribios' Suite

Read a BED file

Description

Read a BED file

Usage

read_bed(file, ...)

Arguments

file	Character string, name of a BED file.
...	Other parameters passed to read.table. If not specified, default settings are used.

Value

A data.frame containing all information in the BED file.

References

Definition of BED files can be found at https://www.ensembl.org/info/website/upload/bed.html.

See Also

read.table

Examples

lines <- paste0("#track type=bedDetail ionVersion=4.0 name=\"IAD50039-4_IAD87652-4_Design\"",
 "solution_type=4 description=\"TargetRegions_AmpliSeqID_IAD50039 AmpliSeq_Version=3.0.1",
 " Workflow=RNA merged with TargetRegions_AmpliSeqID_IAD87652 AmpliSeq_Version=4.48 Workflow=RNA\"",
 " color=77,175,74 priority=2", "\n",
 "NM_000014\t3316\t3421\tAMPL1384\t0\t+\t.\tGENE_ID=A2M;EntrezGeneID=2", "\n",
 "NM_005502\t2488\t2589\tAMPL28385508\t0\t+\t.\tGENE_ID=ABCA1;EntrezGeneID=19","\n",
 "NM_000927\t2520\t2624\tAMPL5599607\t0\t+\t.\tGENE_ID=ABCB1;EntrezGeneID=5243","\n",
 "NM_000443\t1367\t1470\tAMPL5513474\t0\t+\t.\tGENE_ID=ABCB4;EntrezGeneID=5244")
 read_bed(textConnection(lines))

ribiosIO documentation built on Feb. 20, 2026, 5:09 p.m.