heterogeneity_param_prior: Determine the prior distribution for the heterogeneity...

In rnmamod: Bayesian Network Meta-Analysis with Missing Participants

Determine the prior distribution for the heterogeneity parameter

Description

Generates the prior distribution (weakly informative or empirically-based) for the heterogeneity parameter. run_model inherits heterogeneity_param_prior via the argument heter_prior.

Usage

heterogeneity_param_prior(measure, model, heter_prior)

Arguments

measure	Character string indicating the effect measure. For a binary outcome, the following can be considered: "OR", "RR" or "RD" for the odds ratio, relative risk, and risk difference, respectively. For a continuous outcome, the following can be considered: "MD", "SMD", or "ROM" for mean difference, standardised mean difference and ratio of means, respectively.
model	Character string indicating the analysis model with values "RE", or "FE" for the random-effects and fixed-effect model, respectively. The default argument is "RE".
heter_prior	A list of three elements with the following order: 1) a character string indicating the distribution with (currently available) values "halfnormal", "uniform", "lognormal", or "logt"; 2) two numeric values that refer to the parameters of the selected distribution. For "lognormal", and "logt" these numbers refer to the mean and precision, respectively. For "halfnormal", these numbers refer to zero and the scale parameter (equal to 4 or 1 being the corresponding precision of the scale parameter 0.5 or 1). For "uniform", these numbers refer to the minimum and maximum value of the distribution.

Details

The names of the (current) prior distributions follow the JAGS syntax. The mean and precision of "lognormal" and "logt" should align with the values proposed by Turner et al. (2015) and Rhodes et al. (2015) for the corresponding empirically-based prior distributions when measure is "OR" or "SMD", respectively. The users may refer to Dias et al. (2013) to determine the minimum and maximum value of the uniform distribution, and to Friede et al. (2017) to determine the mean and precision of the half-normal distribution. When model is "FE", heterogeneity_param_prior is ignored in run_model.

Value

A value to be passed to run_model.

Author(s)

Loukia M. Spineli

References

Dias S, Sutton AJ, Ades AE, Welton NJ. Evidence synthesis for decision making 2: a generalized linear modeling framework for pairwise and network meta-analysis of randomized controlled trials. Med Decis Making 2013;33(5):607–17. doi: 10.1177/0272989X12458724

Friede T, Roever C, Wandel S, Neuenschwander B. Meta-analysis of two studies in the presence of heterogeneity with applications in rare diseases. Biom J 2017;59(4):658–71. doi: 10.1002/bimj.201500236

Rhodes KM, Turner RM, Higgins JP. Predictive distributions were developed for the extent of heterogeneity in meta-analyses of continuous outcome data. J Clin Epidemiol 2015;68(1):52–60. doi: 10.1016/j.jclinepi.2014.08.012

Turner RM, Jackson D, Wei Y, Thompson SG, Higgins JP. Predictive distributions for between-study heterogeneity and simple methods for their application in Bayesian meta-analysis. Stat Med 2015;34(6):984–98. doi: 10.1002/sim.6381

See Also

run_model

rnmamod documentation built on May 29, 2024, 2:44 a.m.