bgGeneNorm: Normalise by background gene set

In roots: Reconstructing Ordered Ontogenic Trajectories

Description

Normalise by background gene set

Usage

bgGeneNorm(x, threshold = 0.05)

Arguments

x	Matrix to be normalised with cells in rows and genes in columns
threshold	Default 0.05. The threshold below which a gene is deemed background

Details

Normalise by background gene set. Find background genes that are expressed at a lower percentage of the total library size per cell than 'threshold' parameter. These genes are used to calculate a normalisation factor.

Value

Returns a normalised matrix of same dimenions as 'x'

Author(s)

Wajid Jawaid

Examples

## Not run: 
normGenes <- bgGeneNorm(x)

## End(Not run)

roots documentation built on May 2, 2019, 6:45 a.m.