In addition to searchplos()
and related searching functions, there are a
few slightly different ways to search: faceting and highlighted searches.
Faceting allows you to ask, e.g., how many articles are published in each of
the PLOS journals. Highlighting allows you to ask, e.g., highlight terms that
I search for in the text results given back, which can make downstream
processing easier, and help visualize search results (see highbrow()
below).
install.packages("rplos")
library('rplos')
Facet by journal
facetplos(q='*:*', facet.field='journal')
#> $facet_queries #> NULL #> #> $facet_fields #> $facet_fields$journal #> # A tibble: 9 x 2 #> term value #> <chr> <chr> #> 1 plos one 2073767 #> 2 plos genetics 77191 #> 3 plos neglected tropical diseases 72937 #> 4 plos pathogens 71789 #> 5 plos computational biology 66404 #> 6 plos biology 44593 #> 7 plos medicine 32612 #> 8 plos clinical trials 521 #> 9 plos medicin 9 #> #> #> $facet_pivot #> NULL #> #> $facet_dates #> NULL #> #> $facet_ranges #> NULL
Using facet.query
to get counts
facetplos(q='*:*', facet.field='journal', facet.query='cell,bird')
#> $facet_queries #> # A tibble: 1 x 2 #> term value #> <chr> <int> #> 1 cell,bird 12052 #> #> $facet_fields #> $facet_fields$journal #> # A tibble: 9 x 2 #> term value #> <chr> <chr> #> 1 plos one 2073767 #> 2 plos genetics 77191 #> 3 plos neglected tropical diseases 72937 #> 4 plos pathogens 71789 #> 5 plos computational biology 66404 #> 6 plos biology 44593 #> 7 plos medicine 32612 #> 8 plos clinical trials 521 #> 9 plos medicin 9 #> #> #> $facet_pivot #> NULL #> #> $facet_dates #> NULL #> #> $facet_ranges #> NULL
Date faceting
facetplos(q='*:*', url=url, facet.date='publication_date', facet.date.start='NOW/DAY-5DAYS', facet.date.end='NOW', facet.date.gap='+1DAY')
#> list()
Search for the term alcohol in the abstracts of articles, return only 10 results
highplos(q='alcohol', hl.fl = 'abstract', rows=2)
#> $`10.1371/journal.pone.0218147` #> $`10.1371/journal.pone.0218147`$abstract #> [1] "Background: Binge drinking, an increasingly common form of <em>alcohol</em> use disorder, is associated" #> #> #> $`10.1371/journal.pone.0138021` #> $`10.1371/journal.pone.0138021`$abstract #> [1] "Background and Aim: Harmful <em>alcohol</em> consumption has long been recognized as being the major"
Search for the term alcohol in the abstracts of articles, and return fragment size of 20 characters, return only 5 results
highplos(q='alcohol', hl.fl='abstract', hl.fragsize=20, rows=2)
#> $`10.1371/journal.pone.0218147` #> $`10.1371/journal.pone.0218147`$abstract #> [1] " common form of <em>alcohol</em>" #> #> #> $`10.1371/journal.pone.0138021` #> $`10.1371/journal.pone.0138021`$abstract #> [1] ": Harmful <em>alcohol</em>"
Search for the term experiment across all sections of an article, return
id (DOI) and title fl only, search in full articles only
(via fq='doc_type:full'
), and return only 10 results
highplos(q='everything:"experiment"', fl='id,title', fq='doc_type:full', rows=2)
#> $`10.1371/journal.pone.0154334` #> $`10.1371/journal.pone.0154334`$everything #> [1] " and designed the <em>experiments</em>: RJ CM AOC. Performed the <em>experiments</em>: RJ AOC. Analyzed the data: RJ. Contributed" #> #> #> $`10.1371/journal.pone.0039681` #> $`10.1371/journal.pone.0039681`$everything #> [1] " Selection of Transcriptomics <em>Experiments</em> Improves Guilt-by-Association Analyses Transcriptomics <em>Experiment</em>"
Browse highlighted fragments in your default browser
This first examle, we only looko at 10 results
out <- highplos(q='alcohol', hl.fl = 'abstract', rows=10) highbrow(out)
But it works quickly with lots of results too
out <- highplos(q='alcohol', hl.fl = 'abstract', rows=1200) highbrow(out)
Any scripts or data that you put into this service are public.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.