halpern_preprocess: 'ANTs' functions for 'Halpern' lab
In rpyANTs: An Alternative Advanced Normalization Tools ('ANTs')

halpern_preprocess

R Documentation

'ANTs' functions for 'Halpern' lab

Description

'ANTs' functions for 'Halpern' lab

Usage

halpern_register_ct_mri(
  fixed,
  moving,
  outprefix,
  fixed_is_ct = TRUE,
  verbose = TRUE
)

halpern_register_template_mri(
  fixed,
  moving,
  outprefix,
  mask = NULL,
  verbose = TRUE
)

halpern_apply_transform_template_mri(roi_folder, outprefix, verbose = TRUE)

Arguments

`fixed`	fixed image as template
`moving`	moving image that is to be registered into `fixed`
`outprefix`	output prefix, needs to be absolute path prefix
`fixed_is_ct`	whether `fixed` is 'CT'
`verbose`	whether to verbose the progress; default is true
`mask`	mask file for template (skull-stripped)
`roi_folder`	template 'ROI' or atlas folder in which the image atlases or masks will be transformed into subject's native brain