rrBLUP: Ridge Regression and Other Kernels for Genomic Selection

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Software for genomic prediction with the RR-BLUP mixed model. One application is to estimate marker effects by ridge regression; alternatively, BLUPs can be calculated based on an additive relationship matrix or a Gaussian kernel.

Author
Jeffrey Endelman
Date of publication
2015-10-28 18:39:27
Maintainer
Jeffrey Endelman <endelman@wisc.edu>
License
GPL-3
Version
4.4
URLs

View on CRAN

Man pages

A.mat
Additive relationship matrix
GWAS
Genome-wide association analysis
kin.blup
Genotypic value prediction based on kinship
kinship.BLUP
Genomic prediction by kinship-BLUP (deprecated)
mixed.solve
Mixed-model solver
rrBLUP-package
Ridge regression and other kernels for genomic selection

Files in this package

rrBLUP
rrBLUP/inst
rrBLUP/inst/CITATION
rrBLUP/NAMESPACE
rrBLUP/NEWS
rrBLUP/R
rrBLUP/R/kin.blup.R
rrBLUP/R/A.mat.R
rrBLUP/R/kinship.BLUP.R
rrBLUP/R/mixed.solve.R
rrBLUP/R/GWAS.R
rrBLUP/MD5
rrBLUP/DESCRIPTION
rrBLUP/man
rrBLUP/man/kinship.BLUP.Rd
rrBLUP/man/GWAS.Rd
rrBLUP/man/mixed.solve.Rd
rrBLUP/man/A.mat.Rd
rrBLUP/man/rrBLUP-package.Rd
rrBLUP/man/kin.blup.Rd