Nothing
testing_hayato
In rrda: Ridge Redundancy Analysis for High-Dimensional Omics Data
check code for console
R CMD check
--no-manual to avoid the html error regarding detecting
Status: 3 NOTEs
See
‘/Users/hayatoyoshioka/Documents/R/HayatoINRAE/rrda.Rcheck/00check.log’
for details.
note 1 -> ca va
- checking CRAN incoming feasibility ... [3s/37s] NOTE
Maintainer: ‘Julie Aubert julie.aubert@inrae.fr’
note 2 -> ca va
- checking for future file timestamps ... NOTE
unable to verify current time
note 3 -> computation time for examples -> ca va
- checking examples ... [19s/19s] NOTE
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
rrda.cv 8.232 0.131 8.521
( cd .. )
R CMD check --as-cran --no-manual rrda_0.0.0.9000.tar.gz
R CMD check --as-cran rrda_0.1.0.tar.gz
* using log directory ‘/Users/hayatoyoshioka/Documents/R/HayatoINRAE/rrda.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Sonoma 14.5
* using session charset: UTF-8
* using options ‘--no-manual --as-cran’
* checking for file ‘rrda/DESCRIPTION’ ... OK
* this is package ‘rrda’ version ‘0.0.0.9000’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/62s] NOTE
Maintainer: ‘Julie Aubert <julie.aubert@inrae.fr>’
New submission
Version contains large components (0.0.0.9000)
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘rrda’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... NOTE
unable to verify current time
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [19s/19s] NOTE
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
rrda.cv 8.232 0.131 8.521
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 3 NOTEs
R CMD check
it say there is main in the rd
R CMD check --as-cran rrda_0.0.0.9000.tar.gz
(base) Hayatos-MacBook-Pro:HayatoINRAE hayatoyoshioka$ R CMD check --as-cran rrda_0.0.0.9000.tar.gz
* using log directory ‘/Users/hayatoyoshioka/Documents/R/HayatoINRAE/rrda.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Sonoma 14.5
* using session charset: UTF-8
* using option ‘--as-cran’
* checking for file ‘rrda/DESCRIPTION’ ... OK
* this is package ‘rrda’ version ‘0.0.0.9000’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/34s] NOTE
Maintainer: ‘Julie Aubert <julie.aubert@inrae.fr>’
New submission
Version contains large components (0.0.0.9000)
DESCRIPTION fields with placeholder content:
Title: what the package does (one line, title case)
Description: what the package does (one paragraph).
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘rrda’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... NOTE
unable to verify current time
* checking DESCRIPTION meta-information ... NOTE
Authors@R field gives persons with invalid ORCID identifiers:
Hayato Yoshioka <yoshioka-hayato393@g.ecc.u-tokyo.ac.jp> [aut] (YOUR-ORCID-ID)
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [19s/19s] NOTE
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
rrda.cv 8.129 0.147 8.417
* checking PDF version of manual ... OK
* checking HTML version of manual ... NOTE
Found the following HTML validation problems:
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Skipping checking math rendering: package 'V8' unavailable
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 5 NOTEs
See
‘/Users/hayatoyoshioka/Documents/R/HayatoINRAE/rrda.Rcheck/00check.log’
for details.
(base) Hayatos-MacBook-Pro:HayatoINRAE hayatoyoshioka$
html check
tools::Rd2HTML("rrda/man/Bhat_mat_rlist.Rd")
<!DOCTYPE html><html><head><title>R: Generate a list of rank-specific Bhat matrices (the...</title>
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<table style="width: 100%;"><tr><td>Bhat_mat_rlist</td><td style="text-align: right;">R Documentation</td></tr></table>
<h2>Generate a list of rank-specific Bhat matrices (the coefficient of Ridge Redundancy Analysis for each parameter lambda and nrank).</h2>
<h3>Description</h3>
<p>Generate a list of rank-specific Bhat matrices (the coefficient of Ridge Redundancy Analysis for each parameter lambda and nrank). In our formula, Bhat is stored as LeftBhatlambda_k (p times r matrix) and RightBhatlambda_k (q times r). Here, n is the number of samples, p is the number of variables of X, q is the number of variables of Y, and r is the specified rank in the Ridge Redundancy Analysis.
</p>
<h3>Usage</h3>
<pre><code class='language-R'>Bhat_mat_rlist(Bhat_comp_1L, nrank)
</code></pre>
<h3>Arguments</h3>
<table>
<tr><td><code id="Bhat_comp_1L">Bhat_comp_1L</code></td>
<td>
<p>A list containing components of Bhat for each lambda value.</p>
</td></tr>
<tr><td><code id="nrank">nrank</code></td>
<td>
<p>A numeric vector indicating the rank(s) of Bhat.</p>
</td></tr>
</table>
<h3>Value</h3>
<p>A list of matrices, each representing a rank-specific Bhat matrix.
</p>
</main>
</div>
</body></html>
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check code for console
R CMD check
--no-manual to avoid the html error regarding detecting
Status: 3 NOTEs See ‘/Users/hayatoyoshioka/Documents/R/HayatoINRAE/rrda.Rcheck/00check.log’ for details.
note 1 -> ca va
- checking CRAN incoming feasibility ... [3s/37s] NOTE Maintainer: ‘Julie Aubert julie.aubert@inrae.fr’
note 2 -> ca va
- checking for future file timestamps ... NOTE unable to verify current time
note 3 -> computation time for examples -> ca va
- checking examples ... [19s/19s] NOTE Examples with CPU (user + system) or elapsed time > 5s user system elapsed rrda.cv 8.232 0.131 8.521
( cd .. ) R CMD check --as-cran --no-manual rrda_0.0.0.9000.tar.gz
R CMD check --as-cran rrda_0.1.0.tar.gz
* using log directory ‘/Users/hayatoyoshioka/Documents/R/HayatoINRAE/rrda.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Sonoma 14.5
* using session charset: UTF-8
* using options ‘--no-manual --as-cran’
* checking for file ‘rrda/DESCRIPTION’ ... OK
* this is package ‘rrda’ version ‘0.0.0.9000’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/62s] NOTE
Maintainer: ‘Julie Aubert <julie.aubert@inrae.fr>’
New submission
Version contains large components (0.0.0.9000)
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘rrda’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... NOTE
unable to verify current time
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [19s/19s] NOTE
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
rrda.cv 8.232 0.131 8.521
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 3 NOTEs
R CMD check
it say there is main in the rd R CMD check --as-cran rrda_0.0.0.9000.tar.gz
(base) Hayatos-MacBook-Pro:HayatoINRAE hayatoyoshioka$ R CMD check --as-cran rrda_0.0.0.9000.tar.gz
* using log directory ‘/Users/hayatoyoshioka/Documents/R/HayatoINRAE/rrda.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Sonoma 14.5
* using session charset: UTF-8
* using option ‘--as-cran’
* checking for file ‘rrda/DESCRIPTION’ ... OK
* this is package ‘rrda’ version ‘0.0.0.9000’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/34s] NOTE
Maintainer: ‘Julie Aubert <julie.aubert@inrae.fr>’
New submission
Version contains large components (0.0.0.9000)
DESCRIPTION fields with placeholder content:
Title: what the package does (one line, title case)
Description: what the package does (one paragraph).
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘rrda’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... NOTE
unable to verify current time
* checking DESCRIPTION meta-information ... NOTE
Authors@R field gives persons with invalid ORCID identifiers:
Hayato Yoshioka <yoshioka-hayato393@g.ecc.u-tokyo.ac.jp> [aut] (YOUR-ORCID-ID)
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [19s/19s] NOTE
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
rrda.cv 8.129 0.147 8.417
* checking PDF version of manual ... OK
* checking HTML version of manual ... NOTE
Found the following HTML validation problems:
Bhat_mat_rlist.html:15:44 (Bhat_mat_rlist.Rd:5): Error: <main> is not recognized!
Bhat_mat_rlist.html:15:44 (Bhat_mat_rlist.Rd:5): Warning: discarding unexpected <main>
Bhat_mat_rlist.html:52:1 (Bhat_mat_rlist.Rd:15): Warning: discarding unexpected </main>
Bhat_mat_rlist.html:4:1 (Bhat_mat_rlist.Rd:5): Warning: <link> inserting "type" attribute
Bhat_mat_rlist.html:12:1 (Bhat_mat_rlist.Rd:5): Warning: <script> proprietary attribute "onload"
Bhat_mat_rlist.html:12:1 (Bhat_mat_rlist.Rd:5): Warning: <script> inserting "type" attribute
Bhat_mat_rlist.html:17:1 (Bhat_mat_rlist.Rd:5): Warning: <table> lacks "summary" attribute
Bhat_mat_rlist.html:35:1 (Bhat_mat_rlist.Rd:10): Warning: <table> lacks "summary" attribute
MSE_lambda_rank.html:15:44 (MSE_lambda_rank.Rd:5): Error: <main> is not recognized!
MSE_lambda_rank.html:15:44 (MSE_lambda_rank.Rd:5): Warning: discarding unexpected <main>
MSE_lambda_rank.html:60:1 (MSE_lambda_rank.Rd:19): Warning: discarding unexpected </main>
MSE_lambda_rank.html:4:1 (MSE_lambda_rank.Rd:5): Warning: <link> inserting "type" attribute
MSE_lambda_rank.html:12:1 (MSE_lambda_rank.Rd:5): Warning: <script> proprietary attribute "onload"
MSE_lambda_rank.html:12:1 (MSE_lambda_rank.Rd:5): Warning: <script> inserting "type" attribute
MSE_lambda_rank.html:17:1 (MSE_lambda_rank.Rd:5): Warning: <table> lacks "summary" attribute
MSE_lambda_rank.html:35:1 (MSE_lambda_rank.Rd:10): Warning: <table> lacks "summary" attribute
Yhat_mat_rlist.html:15:44 (Yhat_mat_rlist.Rd:5): Error: <main> is not recognized!
Yhat_mat_rlist.html:15:44 (Yhat_mat_rlist.Rd:5): Warning: discarding unexpected <main>
Yhat_mat_rlist.html:56:1 (Yhat_mat_rlist.Rd:17): Warning: discarding unexpected </main>
Yhat_mat_rlist.html:4:1 (Yhat_mat_rlist.Rd:5): Warning: <link> inserting "type" attribute
Yhat_mat_rlist.html:12:1 (Yhat_mat_rlist.Rd:5): Warning: <script> proprietary attribute "onload"
Yhat_mat_rlist.html:12:1 (Yhat_mat_rlist.Rd:5): Warning: <script> inserting "type" attribute
Yhat_mat_rlist.html:17:1 (Yhat_mat_rlist.Rd:5): Warning: <table> lacks "summary" attribute
Yhat_mat_rlist.html:35:1 (Yhat_mat_rlist.Rd:10): Warning: <table> lacks "summary" attribute
get_Bhat_comp.html:15:44 (get_Bhat_comp.Rd:5): Error: <main> is not recognized!
get_Bhat_comp.html:15:44 (get_Bhat_comp.Rd:5): Warning: discarding unexpected <main>
get_Bhat_comp.html:60:1 (get_Bhat_comp.Rd:19): Warning: discarding unexpected </main>
get_Bhat_comp.html:4:1 (get_Bhat_comp.Rd:5): Warning: <link> inserting "type" attribute
get_Bhat_comp.html:12:1 (get_Bhat_comp.Rd:5): Warning: <script> proprietary attribute "onload"
get_Bhat_comp.html:12:1 (get_Bhat_comp.Rd:5): Warning: <script> inserting "type" attribute
get_Bhat_comp.html:17:1 (get_Bhat_comp.Rd:5): Warning: <table> lacks "summary" attribute
get_Bhat_comp.html:35:1 (get_Bhat_comp.Rd:10): Warning: <table> lacks "summary" attribute
get_lambda.html:15:44 (get_lambda.Rd:5): Error: <main> is not recognized!
get_lambda.html:15:44 (get_lambda.Rd:5): Warning: discarding unexpected <main>
get_lambda.html:64:1 (get_lambda.Rd:21): Warning: discarding unexpected </main>
get_lambda.html:4:1 (get_lambda.Rd:5): Warning: <link> inserting "type" attribute
get_lambda.html:12:1 (get_lambda.Rd:5): Warning: <script> proprietary attribute "onload"
get_lambda.html:12:1 (get_lambda.Rd:5): Warning: <script> inserting "type" attribute
get_lambda.html:17:1 (get_lambda.Rd:5): Warning: <table> lacks "summary" attribute
get_lambda.html:35:1 (get_lambda.Rd:10): Warning: <table> lacks "summary" attribute
get_rlist.html:15:44 (get_rlist.Rd:5): Error: <main> is not recognized!
get_rlist.html:15:44 (get_rlist.Rd:5): Warning: discarding unexpected <main>
get_rlist.html:56:1 (get_rlist.Rd:17): Warning: discarding unexpected </main>
get_rlist.html:4:1 (get_rlist.Rd:5): Warning: <link> inserting "type" attribute
get_rlist.html:12:1 (get_rlist.Rd:5): Warning: <script> proprietary attribute "onload"
get_rlist.html:12:1 (get_rlist.Rd:5): Warning: <script> inserting "type" attribute
get_rlist.html:17:1 (get_rlist.Rd:5): Warning: <table> lacks "summary" attribute
get_rlist.html:35:1 (get_rlist.Rd:10): Warning: <table> lacks "summary" attribute
rdasim1.html:15:44 (rdasim1.Rd:5): Error: <main> is not recognized!
rdasim1.html:15:44 (rdasim1.Rd:5): Warning: discarding unexpected <main>
rdasim1.html:68:1 (rdasim1.Rd:27): Warning: discarding unexpected </main>
rdasim1.html:4:1 (rdasim1.Rd:5): Warning: <link> inserting "type" attribute
rdasim1.html:12:1 (rdasim1.Rd:5): Warning: <script> proprietary attribute "onload"
rdasim1.html:12:1 (rdasim1.Rd:5): Warning: <script> inserting "type" attribute
rdasim1.html:17:1 (rdasim1.Rd:5): Warning: <table> lacks "summary" attribute
rdasim1.html:35:1 (rdasim1.Rd:10): Warning: <table> lacks "summary" attribute
rdasim2.html:15:44 (rdasim2.Rd:5): Error: <main> is not recognized!
rdasim2.html:15:44 (rdasim2.Rd:5): Warning: discarding unexpected <main>
rdasim2.html:76:1 (rdasim2.Rd:31): Warning: discarding unexpected </main>
rdasim2.html:4:1 (rdasim2.Rd:5): Warning: <link> inserting "type" attribute
rdasim2.html:12:1 (rdasim2.Rd:5): Warning: <script> proprietary attribute "onload"
rdasim2.html:12:1 (rdasim2.Rd:5): Warning: <script> inserting "type" attribute
rdasim2.html:17:1 (rdasim2.Rd:5): Warning: <table> lacks "summary" attribute
rdasim2.html:35:1 (rdasim2.Rd:10): Warning: <table> lacks "summary" attribute
rrda.coef.html:15:44 (rrda.coef.Rd:5): Error: <main> is not recognized!
rrda.coef.html:15:44 (rrda.coef.Rd:5): Warning: discarding unexpected <main>
rrda.coef.html:82:1 (rrda.coef.Rd:39): Warning: discarding unexpected </main>
rrda.coef.html:4:1 (rrda.coef.Rd:5): Warning: <link> inserting "type" attribute
rrda.coef.html:12:1 (rrda.coef.Rd:5): Warning: <script> proprietary attribute "onload"
rrda.coef.html:12:1 (rrda.coef.Rd:5): Warning: <script> inserting "type" attribute
rrda.coef.html:17:1 (rrda.coef.Rd:5): Warning: <table> lacks "summary" attribute
rrda.coef.html:50:1 (rrda.coef.Rd:10): Warning: <table> lacks "summary" attribute
rrda.cv.html:15:44 (rrda.cv.Rd:5): Error: <main> is not recognized!
rrda.cv.html:15:44 (rrda.cv.Rd:5): Warning: discarding unexpected <main>
rrda.cv.html:154:1 (rrda.cv.Rd:94): Warning: discarding unexpected </main>
rrda.cv.html:4:1 (rrda.cv.Rd:5): Warning: <link> inserting "type" attribute
rrda.cv.html:12:1 (rrda.cv.Rd:5): Warning: <script> proprietary attribute "onload"
rrda.cv.html:12:1 (rrda.cv.Rd:5): Warning: <script> inserting "type" attribute
rrda.cv.html:17:1 (rrda.cv.Rd:5): Warning: <table> lacks "summary" attribute
rrda.cv.html:58:1 (rrda.cv.Rd:24): Warning: <table> lacks "summary" attribute
rrda.fit.html:15:44 (rrda.fit.Rd:5): Error: <main> is not recognized!
rrda.fit.html:15:44 (rrda.fit.Rd:5): Warning: discarding unexpected <main>
rrda.fit.html:159:1 (rrda.fit.Rd:82): Warning: discarding unexpected </main>
rrda.fit.html:4:1 (rrda.fit.Rd:5): Warning: <link> inserting "type" attribute
rrda.fit.html:12:1 (rrda.fit.Rd:5): Warning: <script> proprietary attribute "onload"
rrda.fit.html:12:1 (rrda.fit.Rd:5): Warning: <script> inserting "type" attribute
rrda.fit.html:17:1 (rrda.fit.Rd:5): Warning: <table> lacks "summary" attribute
rrda.fit.html:102:1 (rrda.fit.Rd:20): Warning: <table> lacks "summary" attribute
rrda.heatmap.html:15:44 (rrda.heatmap.Rd:5): Error: <main> is not recognized!
rrda.heatmap.html:15:44 (rrda.heatmap.Rd:5): Warning: discarding unexpected <main>
rrda.heatmap.html:86:1 (rrda.heatmap.Rd:41): Warning: discarding unexpected </main>
rrda.heatmap.html:4:1 (rrda.heatmap.Rd:5): Warning: <link> inserting "type" attribute
rrda.heatmap.html:12:1 (rrda.heatmap.Rd:5): Warning: <script> proprietary attribute "onload"
rrda.heatmap.html:12:1 (rrda.heatmap.Rd:5): Warning: <script> inserting "type" attribute
rrda.heatmap.html:17:1 (rrda.heatmap.Rd:5): Warning: <table> lacks "summary" attribute
rrda.heatmap.html:42:1 (rrda.heatmap.Rd:17): Warning: <table> lacks "summary" attribute
rrda.plot.html:15:44 (rrda.plot.Rd:5): Error: <main> is not recognized!
rrda.plot.html:15:44 (rrda.plot.Rd:5): Warning: discarding unexpected <main>
rrda.plot.html:86:1 (rrda.plot.Rd:41): Warning: discarding unexpected </main>
rrda.plot.html:4:1 (rrda.plot.Rd:5): Warning: <link> inserting "type" attribute
rrda.plot.html:12:1 (rrda.plot.Rd:5): Warning: <script> proprietary attribute "onload"
rrda.plot.html:12:1 (rrda.plot.Rd:5): Warning: <script> inserting "type" attribute
rrda.plot.html:17:1 (rrda.plot.Rd:5): Warning: <table> lacks "summary" attribute
rrda.plot.html:42:1 (rrda.plot.Rd:17): Warning: <table> lacks "summary" attribute
rrda.predict.html:15:44 (rrda.predict.Rd:5): Error: <main> is not recognized!
rrda.predict.html:15:44 (rrda.predict.Rd:5): Warning: discarding unexpected <main>
rrda.predict.html:83:1 (rrda.predict.Rd:38): Warning: discarding unexpected </main>
rrda.predict.html:4:1 (rrda.predict.Rd:5): Warning: <link> inserting "type" attribute
rrda.predict.html:12:1 (rrda.predict.Rd:5): Warning: <script> proprietary attribute "onload"
rrda.predict.html:12:1 (rrda.predict.Rd:5): Warning: <script> inserting "type" attribute
rrda.predict.html:17:1 (rrda.predict.Rd:5): Warning: <table> lacks "summary" attribute
rrda.predict.html:48:1 (rrda.predict.Rd:10): Warning: <table> lacks "summary" attribute
rrda.summary.html:15:44 (rrda.summary.Rd:5): Error: <main> is not recognized!
rrda.summary.html:15:44 (rrda.summary.Rd:5): Warning: discarding unexpected <main>
rrda.summary.html:48:1 (rrda.summary.Rd:13): Warning: discarding unexpected </main>
rrda.summary.html:4:1 (rrda.summary.Rd:5): Warning: <link> inserting "type" attribute
rrda.summary.html:12:1 (rrda.summary.Rd:5): Warning: <script> proprietary attribute "onload"
rrda.summary.html:12:1 (rrda.summary.Rd:5): Warning: <script> inserting "type" attribute
rrda.summary.html:17:1 (rrda.summary.Rd:5): Warning: <table> lacks "summary" attribute
rrda.summary.html:35:1 (rrda.summary.Rd:10): Warning: <table> lacks "summary" attribute
sqrt_inv_d2_lambda.html:15:44 (sqrt_inv_d2_lambda.Rd:5): Error: <main> is not recognized!
sqrt_inv_d2_lambda.html:15:44 (sqrt_inv_d2_lambda.Rd:5): Warning: discarding unexpected <main>
sqrt_inv_d2_lambda.html:52:1 (sqrt_inv_d2_lambda.Rd:15): Warning: discarding unexpected </main>
sqrt_inv_d2_lambda.html:4:1 (sqrt_inv_d2_lambda.Rd:5): Warning: <link> inserting "type" attribute
sqrt_inv_d2_lambda.html:12:1 (sqrt_inv_d2_lambda.Rd:5): Warning: <script> proprietary attribute "onload"
sqrt_inv_d2_lambda.html:12:1 (sqrt_inv_d2_lambda.Rd:5): Warning: <script> inserting "type" attribute
sqrt_inv_d2_lambda.html:17:1 (sqrt_inv_d2_lambda.Rd:5): Warning: <table> lacks "summary" attribute
sqrt_inv_d2_lambda.html:35:1 (sqrt_inv_d2_lambda.Rd:10): Warning: <table> lacks "summary" attribute
unbiased_scale.html:15:44 (unbiased_scale.Rd:5): Error: <main> is not recognized!
unbiased_scale.html:15:44 (unbiased_scale.Rd:5): Warning: discarding unexpected <main>
unbiased_scale.html:48:1 (unbiased_scale.Rd:13): Warning: discarding unexpected </main>
unbiased_scale.html:4:1 (unbiased_scale.Rd:5): Warning: <link> inserting "type" attribute
unbiased_scale.html:12:1 (unbiased_scale.Rd:5): Warning: <script> proprietary attribute "onload"
unbiased_scale.html:12:1 (unbiased_scale.Rd:5): Warning: <script> inserting "type" attribute
unbiased_scale.html:17:1 (unbiased_scale.Rd:5): Warning: <table> lacks "summary" attribute
unbiased_scale.html:35:1 (unbiased_scale.Rd:10): Warning: <table> lacks "summary" attribute
unscale_matrices.html:15:44 (unscale_matrices.Rd:5): Error: <main> is not recognized!
unscale_matrices.html:15:44 (unscale_matrices.Rd:5): Warning: discarding unexpected <main>
unscale_matrices.html:56:1 (unscale_matrices.Rd:17): Warning: discarding unexpected </main>
unscale_matrices.html:4:1 (unscale_matrices.Rd:5): Warning: <link> inserting "type" attribute
unscale_matrices.html:12:1 (unscale_matrices.Rd:5): Warning: <script> proprietary attribute "onload"
unscale_matrices.html:12:1 (unscale_matrices.Rd:5): Warning: <script> inserting "type" attribute
unscale_matrices.html:17:1 (unscale_matrices.Rd:5): Warning: <table> lacks "summary" attribute
unscale_matrices.html:35:1 (unscale_matrices.Rd:10): Warning: <table> lacks "summary" attribute
unscale_nested_matrices_map.html:15:44 (unscale_nested_matrices_map.Rd:5): Error: <main> is not recognized!
unscale_nested_matrices_map.html:15:44 (unscale_nested_matrices_map.Rd:5): Warning: discarding unexpected <main>
unscale_nested_matrices_map.html:56:1 (unscale_nested_matrices_map.Rd:17): Warning: discarding unexpected </main>
unscale_nested_matrices_map.html:4:1 (unscale_nested_matrices_map.Rd:5): Warning: <link> inserting "type" attribute
unscale_nested_matrices_map.html:12:1 (unscale_nested_matrices_map.Rd:5): Warning: <script> proprietary attribute "onload"
unscale_nested_matrices_map.html:12:1 (unscale_nested_matrices_map.Rd:5): Warning: <script> inserting "type" attribute
unscale_nested_matrices_map.html:17:1 (unscale_nested_matrices_map.Rd:5): Warning: <table> lacks "summary" attribute
unscale_nested_matrices_map.html:35:1 (unscale_nested_matrices_map.Rd:10): Warning: <table> lacks "summary" attribute
Skipping checking math rendering: package 'V8' unavailable
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 5 NOTEs
See
‘/Users/hayatoyoshioka/Documents/R/HayatoINRAE/rrda.Rcheck/00check.log’
for details.
(base) Hayatos-MacBook-Pro:HayatoINRAE hayatoyoshioka$
html check
tools::Rd2HTML("rrda/man/Bhat_mat_rlist.Rd")
<!DOCTYPE html><html><head><title>R: Generate a list of rank-specific Bhat matrices (the...</title> <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> <meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes" /> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/katex@0.15.3/dist/katex.min.css"> <script type="text/javascript"> const macros = { "\\R": "\\textsf{R}", "\\code": "\\texttt"}; function processMathHTML() { var l = document.getElementsByClassName('reqn'); for (let e of l) { katex.render(e.textContent, e, { throwOnError: false, macros }); } return; }</script> <script defer src="https://cdn.jsdelivr.net/npm/katex@0.15.3/dist/katex.min.js" onload="processMathHTML();"></script> <link rel="stylesheet" type="text/css" href="R.css" /> </head><body><div class="container"><main> <table style="width: 100%;"><tr><td>Bhat_mat_rlist</td><td style="text-align: right;">R Documentation</td></tr></table> <h2>Generate a list of rank-specific Bhat matrices (the coefficient of Ridge Redundancy Analysis for each parameter lambda and nrank).</h2> <h3>Description</h3> <p>Generate a list of rank-specific Bhat matrices (the coefficient of Ridge Redundancy Analysis for each parameter lambda and nrank). In our formula, Bhat is stored as LeftBhatlambda_k (p times r matrix) and RightBhatlambda_k (q times r). Here, n is the number of samples, p is the number of variables of X, q is the number of variables of Y, and r is the specified rank in the Ridge Redundancy Analysis. </p> <h3>Usage</h3> <pre><code class='language-R'>Bhat_mat_rlist(Bhat_comp_1L, nrank) </code></pre> <h3>Arguments</h3> <table> <tr><td><code id="Bhat_comp_1L">Bhat_comp_1L</code></td> <td> <p>A list containing components of Bhat for each lambda value.</p> </td></tr> <tr><td><code id="nrank">nrank</code></td> <td> <p>A numeric vector indicating the rank(s) of Bhat.</p> </td></tr> </table> <h3>Value</h3> <p>A list of matrices, each representing a rank-specific Bhat matrix. </p> </main> </div> </body></html>
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