parse_kraken_report: Parse kraken report file

In rsahmi: Single-Cell Analysis of Host-Microbiome Interactions

Parse kraken report file

Description

Parse kraken report file

Usage

parse_kraken_report(kraken_report, intermediate_ranks = TRUE, mpa = FALSE)

Arguments

kraken_report	The path to kraken report file.
intermediate_ranks	A bool indicates whether to include non-traditional taxonomic ranks in output.
mpa	A bool indicates whether to use mpa-style.

Value

A polars DataFrame.

See Also

https://github.com/DerrickWood/kraken2/blob/master/docs/MANUAL.markdown

rsahmi documentation built on April 4, 2025, 1:46 a.m.