Description Usage Arguments Details Value Author(s) Examples
Assuming qualitative tests are performed on n pools of m seeds, use multinomial group testing to estimate the percent of seeds with single genetic traits and the percentage of seeds with stacked genetic traits.
Print method for seedstack object.
1 2 3 4 5 6 7 8 9 10 11 12 13 | stack3(n, m, nA, nB, nC, nAB, nAC, nBC, nABC, existAB = "Yes",
existAC = "Yes", existBC = "Yes", existABC = "Yes", fpr = 0,
fnr = 0, check = TRUE)
stack2Excel(...)
stack3Excel(...)
stack2(n, m, nA, nB, nAB, existAB = "Yes", fpr = 0, fnr = 0,
check = TRUE)
## S3 method for class 'seedstack'
print(x, ...)
|
n |
the number of pools |
m |
the number of seeds in each pool |
nA |
the number of positive pools for event A only |
nB |
the number of positive pools for event B only |
nAB |
the number of positive pools for both A and B |
nC |
the number of positive pools for event C only |
nAC |
the number of positive pools for both A and C |
nBC |
the number of positive pools for both B and C |
nABC |
the number of positive pools for both A and B and C |
existAB |
do seeds with a stacked event 'AB' exist? |
existAC |
do seeds with a stacked event 'AC' exist? |
existBC |
do seeds with a stacked event 'BC' exist? |
existABC |
do seeds with a stacked event 'ABC' exist? |
fpr |
false positive rate (proportion) for detecting GM events |
fnr |
false negative rate (proportion) for detecting GM events |
check |
Should simple checks be performed? Defaults to TRUE |
... |
Other arguments passed |
x |
A data frame to print pretty. |
The 'stack2Excel' and 'stack3Excel' functions are simple wrappers that are intended to be called from Excel and should not issue any warnings.
A data frame with the estimated proportion of seeds for each event, the observed and expected number of positive pools, and whether or not each event can exist.
Kevin Wright, Jean-Louis Laffont
1 2 |
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