rsml: Plant Root System Markup Language (RSML) File Processing
Version 1.3

Read and analyse Root System Markup Language (RSML) files, used to store plant root system architecture data. More information can be found at the address .

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AuthorGuillaume Lobet
Date of publication2016-01-05 10:18:47
MaintainerGuillaume Lobet <guillaume.lobet@ulg.ac.be>
LicenseGPL-2
Version1.3
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("rsml")

Man pages

addChildToRoot: Add a child root (lateral) to an existing root
addNodeToRoot: Add a node to an existing root
addRootToPlant: Add a root to an existing plant. Returns the plant with the...
anagallis: Root system of a anagallis plant in 3D
coords: Get the coordinates of the root nodes
getInsertionAngle: Compute the insertion angle of the root on its parent
getInsertionPosition: Compute the insertion of the root on its parent
latLength: Compute the length of the lateral root based on the...
length.plant: Compute the length of the root based on the coordinates of...
length.root: Compute the length of the root based on the coordinatres of...
lupin: Root system of a lupin plant in 2D
maize: Root system of a maize plant in 3D
meanInsertionAngle: Compute the mean insertion angle of the children (lateral)...
meanInsertionAnglePlant: Compute the mean insertion angle of all the laterals in the...
meanInterbranch: Compute the mean interbranch distance of the children...
meanInterbranchPlant: Compute the mean interbranch distance of all the primary...
nChild: Get the number of children in a root
nLatRoot: Compute the number of lateral roots in the plant
nNode: Get the number of nodes in a root
node: Node constructor
nPrimRoot: Compute the number of primary roots in the plant
nRoot: Compute the total number of roots in the plant
plant: Plant object, containing a root system, composed of roots
plot.plant: Plot the root system
primLength: Compute the length of the primary root based on the...
print.node: Print the node
print.plant: Print the plant
root: Root constructor
rsmlToList: Import a single RSML file into a List. Work only if the roots...
rsmlToPlant: Import a single RSML file into a Plant object
summary.plant: Summary of the plant
totalLength: Compute the length of the root and its children based on the...
xrange: Compute the xrange of the root
xrangePlant: Compute the xrange of the plant
yrange: Compute the xrange of the root
yrangePlant: Compute the yrange of the plant
zrange: Compute the xrange of the root
zrangePlant: Compute the zrange of the plant

Functions

addChildToRoot Man page Source code
addNodeToRoot Man page Source code
addRootToPlant Man page Source code
anagallis Man page
coords Man page Source code
getInsertionAngle Man page Source code
getInsertionPosition Man page Source code
latLength Man page Source code
length.plant Man page Source code
length.root Man page Source code
lupin Man page
maize Man page
meanInsertionAngle Man page Source code
meanInsertionAnglePlant Man page Source code
meanInterbranch Man page Source code
meanInterbranchPlant Man page Source code
nChild Man page Source code
nLatRoot Man page Source code
nNode Man page Source code
nPrimRoot Man page Source code
nRoot Man page Source code
node Man page Source code
plant Man page Source code
plot.plant Man page Source code
primLength Man page Source code
print.node Man page Source code
print.plant Man page Source code
root Man page Source code
rsmlToList Man page Source code
rsmlToPlant Man page Source code
summary.plant Man page Source code
totalLength Man page Source code
xrange Man page Source code
xrangePlant Man page Source code
yrange Man page Source code
yrangePlant Man page Source code
zrange Man page Source code
zrangePlant Man page Source code

Files

inst
inst/extdata
inst/extdata/maize.rsml
inst/extdata/lupin.rsml
inst/extdata/anagallis.rsml
NAMESPACE
data
data/lupin.rda
data/anagallis.rda
data/maize.rda
R
R/RSML.R
R/rsmlToPlant.R
R/plant_functions.R
R/node_functions.R
R/rsmlToList.R
R/root_functions.R
MD5
DESCRIPTION
man
man/zrange.Rd
man/rsmlToList.Rd
man/length.plant.Rd
man/totalLength.Rd
man/nLatRoot.Rd
man/yrangePlant.Rd
man/xrange.Rd
man/yrange.Rd
man/plot.plant.Rd
man/rsmlToPlant.Rd
man/nChild.Rd
man/nRoot.Rd
man/nNode.Rd
man/summary.plant.Rd
man/length.root.Rd
man/meanInsertionAngle.Rd
man/meanInsertionAnglePlant.Rd
man/meanInterbranch.Rd
man/coords.Rd
man/lupin.Rd
man/primLength.Rd
man/root.Rd
man/nPrimRoot.Rd
man/anagallis.Rd
man/getInsertionAngle.Rd
man/getInsertionPosition.Rd
man/xrangePlant.Rd
man/maize.Rd
man/node.Rd
man/latLength.Rd
man/plant.Rd
man/addRootToPlant.Rd
man/print.node.Rd
man/zrangePlant.Rd
man/print.plant.Rd
man/addNodeToRoot.Rd
man/addChildToRoot.Rd
man/meanInterbranchPlant.Rd
rsml documentation built on May 19, 2017, 11:02 p.m.