Read and analyse Root System Markup Language (RSML) files, used to store plant root system architecture data. More information can be found at the address <http://rootsystemml.github.io/>.
|Date of publication||2016-01-05 10:18:47|
|Maintainer||Guillaume Lobet <email@example.com>|
addChildToRoot: Add a child root (lateral) to an existing root
addNodeToRoot: Add a node to an existing root
addRootToPlant: Add a root to an existing plant. Returns the plant with the...
anagallis: Root system of a anagallis plant in 3D
coords: Get the coordinates of the root nodes
getInsertionAngle: Compute the insertion angle of the root on its parent
getInsertionPosition: Compute the insertion of the root on its parent
latLength: Compute the length of the lateral root based on the...
length.plant: Compute the length of the root based on the coordinates of...
length.root: Compute the length of the root based on the coordinatres of...
lupin: Root system of a lupin plant in 2D
maize: Root system of a maize plant in 3D
meanInsertionAngle: Compute the mean insertion angle of the children (lateral)...
meanInsertionAnglePlant: Compute the mean insertion angle of all the laterals in the...
meanInterbranch: Compute the mean interbranch distance of the children...
meanInterbranchPlant: Compute the mean interbranch distance of all the primary...
nChild: Get the number of children in a root
nLatRoot: Compute the number of lateral roots in the plant
nNode: Get the number of nodes in a root
node: Node constructor
nPrimRoot: Compute the number of primary roots in the plant
nRoot: Compute the total number of roots in the plant
plant: Plant object, containing a root system, composed of roots
plot.plant: Plot the root system
primLength: Compute the length of the primary root based on the...
print.node: Print the node
print.plant: Print the plant
root: Root constructor
rsmlToList: Import a single RSML file into a List. Work only if the roots...
rsmlToPlant: Import a single RSML file into a Plant object
summary.plant: Summary of the plant
totalLength: Compute the length of the root and its children based on the...
xrange: Compute the xrange of the root
xrangePlant: Compute the xrange of the plant
yrange: Compute the xrange of the root
yrangePlant: Compute the yrange of the plant
zrange: Compute the xrange of the root
zrangePlant: Compute the zrange of the plant