Read and analyse Root System Markup Language (RSML) files, used to store plant root system architecture data. More information can be found at the address <http://rootsystemml.github.io/>.

Author | Guillaume Lobet |

Date of publication | 2016-01-05 10:18:47 |

Maintainer | Guillaume Lobet <guillaume.lobet@ulg.ac.be> |

License | GPL-2 |

Version | 1.3 |

**addChildToRoot:** Add a child root (lateral) to an existing root

**addNodeToRoot:** Add a node to an existing root

**addRootToPlant:** Add a root to an existing plant. Returns the plant with the...

**anagallis:** Root system of a anagallis plant in 3D

**coords:** Get the coordinates of the root nodes

**getInsertionAngle:** Compute the insertion angle of the root on its parent

**getInsertionPosition:** Compute the insertion of the root on its parent

**latLength:** Compute the length of the lateral root based on the...

**length.plant:** Compute the length of the root based on the coordinates of...

**length.root:** Compute the length of the root based on the coordinatres of...

**lupin:** Root system of a lupin plant in 2D

**maize:** Root system of a maize plant in 3D

**meanInsertionAngle:** Compute the mean insertion angle of the children (lateral)...

**meanInsertionAnglePlant:** Compute the mean insertion angle of all the laterals in the...

**meanInterbranch:** Compute the mean interbranch distance of the children...

**meanInterbranchPlant:** Compute the mean interbranch distance of all the primary...

**nChild:** Get the number of children in a root

**nLatRoot:** Compute the number of lateral roots in the plant

**nNode:** Get the number of nodes in a root

**node:** Node constructor

**nPrimRoot:** Compute the number of primary roots in the plant

**nRoot:** Compute the total number of roots in the plant

**plant:** Plant object, containing a root system, composed of roots

**plot.plant:** Plot the root system

**primLength:** Compute the length of the primary root based on the...

**print.node:** Print the node

**print.plant:** Print the plant

**root:** Root constructor

**rsmlToList:** Import a single RSML file into a List. Work only if the roots...

**rsmlToPlant:** Import a single RSML file into a Plant object

**summary.plant:** Summary of the plant

**totalLength:** Compute the length of the root and its children based on the...

**xrange:** Compute the xrange of the root

**xrangePlant:** Compute the xrange of the plant

**yrange:** Compute the xrange of the root

**yrangePlant:** Compute the yrange of the plant

**zrange:** Compute the xrange of the root

**zrangePlant:** Compute the zrange of the plant

rsml

rsml/inst

rsml/inst/extdata

rsml/inst/extdata/maize.rsml

rsml/inst/extdata/lupin.rsml

rsml/inst/extdata/anagallis.rsml

rsml/NAMESPACE

rsml/data

rsml/data/lupin.rda

rsml/data/anagallis.rda

rsml/data/maize.rda

rsml/R

rsml/R/RSML.R
rsml/R/rsmlToPlant.R
rsml/R/plant_functions.R
rsml/R/node_functions.R
rsml/R/rsmlToList.R
rsml/R/root_functions.R
rsml/MD5

rsml/DESCRIPTION

rsml/man

rsml/man/zrange.Rd
rsml/man/rsmlToList.Rd
rsml/man/length.plant.Rd
rsml/man/totalLength.Rd
rsml/man/nLatRoot.Rd
rsml/man/yrangePlant.Rd
rsml/man/xrange.Rd
rsml/man/yrange.Rd
rsml/man/plot.plant.Rd
rsml/man/rsmlToPlant.Rd
rsml/man/nChild.Rd
rsml/man/nRoot.Rd
rsml/man/nNode.Rd
rsml/man/summary.plant.Rd
rsml/man/length.root.Rd
rsml/man/meanInsertionAngle.Rd
rsml/man/meanInsertionAnglePlant.Rd
rsml/man/meanInterbranch.Rd
rsml/man/coords.Rd
rsml/man/lupin.Rd
rsml/man/primLength.Rd
rsml/man/root.Rd
rsml/man/nPrimRoot.Rd
rsml/man/anagallis.Rd
rsml/man/getInsertionAngle.Rd
rsml/man/getInsertionPosition.Rd
rsml/man/xrangePlant.Rd
rsml/man/maize.Rd
rsml/man/node.Rd
rsml/man/latLength.Rd
rsml/man/plant.Rd
rsml/man/addRootToPlant.Rd
rsml/man/print.node.Rd
rsml/man/zrangePlant.Rd
rsml/man/print.plant.Rd
rsml/man/addNodeToRoot.Rd
rsml/man/addChildToRoot.Rd
rsml/man/meanInterbranchPlant.Rd
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