rsml: Plant Root System Markup Language (RSML) File Processing

Read and analyse Root System Markup Language (RSML) files, used to store plant root system architecture data. More information can be found at the address <http://rootsystemml.github.io/>.

AuthorGuillaume Lobet
Date of publication2016-01-05 10:18:47
MaintainerGuillaume Lobet <guillaume.lobet@ulg.ac.be>
LicenseGPL-2
Version1.3

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Man pages

addChildToRoot: Add a child root (lateral) to an existing root

addNodeToRoot: Add a node to an existing root

addRootToPlant: Add a root to an existing plant. Returns the plant with the...

anagallis: Root system of a anagallis plant in 3D

coords: Get the coordinates of the root nodes

getInsertionAngle: Compute the insertion angle of the root on its parent

getInsertionPosition: Compute the insertion of the root on its parent

latLength: Compute the length of the lateral root based on the...

length.plant: Compute the length of the root based on the coordinates of...

length.root: Compute the length of the root based on the coordinatres of...

lupin: Root system of a lupin plant in 2D

maize: Root system of a maize plant in 3D

meanInsertionAngle: Compute the mean insertion angle of the children (lateral)...

meanInsertionAnglePlant: Compute the mean insertion angle of all the laterals in the...

meanInterbranch: Compute the mean interbranch distance of the children...

meanInterbranchPlant: Compute the mean interbranch distance of all the primary...

nChild: Get the number of children in a root

nLatRoot: Compute the number of lateral roots in the plant

nNode: Get the number of nodes in a root

node: Node constructor

nPrimRoot: Compute the number of primary roots in the plant

nRoot: Compute the total number of roots in the plant

plant: Plant object, containing a root system, composed of roots

plot.plant: Plot the root system

primLength: Compute the length of the primary root based on the...

print.node: Print the node

print.plant: Print the plant

root: Root constructor

rsmlToList: Import a single RSML file into a List. Work only if the roots...

rsmlToPlant: Import a single RSML file into a Plant object

summary.plant: Summary of the plant

totalLength: Compute the length of the root and its children based on the...

xrange: Compute the xrange of the root

xrangePlant: Compute the xrange of the plant

yrange: Compute the xrange of the root

yrangePlant: Compute the yrange of the plant

zrange: Compute the xrange of the root

zrangePlant: Compute the zrange of the plant

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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