rtk: Rarefaction Tool Kit
Version 0.2.5.1

Rarefy data, calculate diversity and plot the results.

AuthorPaul Saary, Falk Hildebrand
Date of publication2017-04-19 19:15:46 UTC
MaintainerPaul Saary <rtk@paulsaary.de>
LicenseGPL (>= 2)
Version0.2.5.1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("rtk")

Getting started

Package overview
README.md

Popular man pages

collectors.curve: collectors.curve
get.diversity: get.diversity
plot.rarefaction: Plot rarfeaction results
rtk: Rarefy tables
rtk-package: Rarefaction Tool Kit
See all...

All man pages Function index File listing

Man pages

collectors.curve: collectors.curve
get.diversity: get.diversity
plot.rarefaction: Plot rarfeaction results
rtk: Rarefy tables
rtk-package: Rarefaction Tool Kit

Functions

collectors.curve Man page Source code
cum.sample Source code
cum.sample.matched Source code
cum.sample.rare Source code
fit.arrhenius Source code
get.diversity Man page Source code
get.mean.diversity Man page Source code
get.median.diversity Man page Source code
getDivMedians Source code
getDivvs.median Source code
getDivvs.raw Source code
getStepsAccum Source code
plot Man page
plot.rtk Man page Source code
r.median Source code
rare.status Source code
rarefaction.curve Source code
rarefaction.curve.boxplot Source code
rarefactioncurve Man page
rcpp_rarefaction Source code
rtk Man page Source code
rtk-package Man page
sample.diversity Source code
singlePlot Source code

Files

inst
inst/CITATION
tests
tests/testthat.R
tests/testthat
tests/testthat/test_rare.R
src
src/Makevars
src/Rwrapper.cpp
src/ClStr2Mat.cpp
src/Matrix.cpp
src/options.h
src/register.c
src/Math.h
src/Matrix.h
src/RRare.h
src/ClStr2Mat.h
src/RRare.cpp
src/IO.cpp
src/Makevars.win
src/RcppExports.cpp
src/Math.cpp
src/Rwrapper.h
src/IO.h
NAMESPACE
R
R/rarefaction.R
R/rarefaction.plots.R
R/RcppExports.R
R/collectorscurve.R
README.md
MD5
build
build/partial.rdb
DESCRIPTION
man
man/collectors.curve.Rd
man/rtk-package.Rd
man/rtk.Rd
man/plot.rarefaction.Rd
man/get.diversity.Rd
rtk documentation built on May 20, 2017, 1:29 a.m.

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