pop_weight_TDT: compute weights from population controls
In rvTDT: population control weighted rare-variants TDT

Description Usage Arguments Details Value Author(s) References

compute the p value for TDTs

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	kernel_TDT(parent.geno,child.geno,snp.weight)
	lc_TDT(parent.geno,child.geno,snp.weight)
	TDT_permutation(parent.geno,child.geno,snp.weight1,snp.weight2,snp.weight3,nperm)

`parent.geno`	parents genotype
`child.geno`	child genotype
`snp.weight`	weights for each SNP
`nperm`	number of permuations
`snp.weight1`	weights =1 for all SNP
`snp.weight2`	weighted by MAF
`snp.weight3`	weighted by population controls

Package:	rvTDT
Type:	Package
Version:	1.0
Date:	2014-04-07
License:	GPL-3

pvalue

pvalues from the test

Yu Jiang, Andrew S. Allen

Maintainer: Yu Jiang <yu.jiang@dm.duke.edu>

Yu Jiang, Glen A. Satten, Yujun Han, Michael P. Epstein, Erin L. Heinzen, David B. Goldstein, Andrew S. Allen; Utilizing Population Controls in Rare-Variant Case-Parent Association Tests

rvTDT documentation built on May 2, 2019, 9:26 a.m.