Description Usage Arguments Details Value Author(s) References
compute the p value for TDTs
1 2 3 | kernel_TDT(parent.geno,child.geno,snp.weight)
lc_TDT(parent.geno,child.geno,snp.weight)
TDT_permutation(parent.geno,child.geno,snp.weight1,snp.weight2,snp.weight3,nperm)
|
parent.geno |
parents genotype |
child.geno |
child genotype |
snp.weight |
weights for each SNP |
nperm |
number of permuations |
snp.weight1 |
weights =1 for all SNP |
snp.weight2 |
weighted by MAF |
snp.weight3 |
weighted by population controls |
Package: | rvTDT |
Type: | Package |
Version: | 1.0 |
Date: | 2014-04-07 |
License: | GPL-3 |
pvalue |
pvalues from the test |
Yu Jiang, Andrew S. Allen
Maintainer: Yu Jiang <yu.jiang@dm.duke.edu>
Yu Jiang, Glen A. Satten, Yujun Han, Michael P. Epstein, Erin L. Heinzen, David B. Goldstein, Andrew S. Allen; Utilizing Population Controls in Rare-Variant Case-Parent Association Tests
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