construct_conda_yml: Construct a conda yaml

In rworkflows: Test, Document, Containerise, and Deploy R Packages

Construct a conda yaml

Description

Construct a yaml file to be used for building a given conda environment.

Usage

construct_conda_yml(
  name = "test",
  channels = list("conda-forge", "nodefaults"),
  dependencies = list(),
  pip = NULL,
  save_path = here::here(paste0(name, "_conda.yml")),
  return_path = TRUE,
  preview = FALSE,
  verbose = TRUE
)

Arguments

name	Name of conda env.
channels	conda channels to use.
dependencies	Packages to install via conda.
pip	Packages to install via pip.
save_path	Path to save the yaml file to.
return_path	Return the path to the saved yaml workflow file (default: TRUE), or return the yaml object directly.
preview	Print the yaml file to the R console.
verbose	Print messages.

Value

description

Path or yaml object.

Examples

yml <- construct_conda_yml(name="myenv",
                           dependencies=c("anndata","scanpy"),
                           return_path = FALSE,  
                           ## Writing to temp only for example
                           save_path=tempfile(fileext="myenv_conda.yml"))

rworkflows documentation built on Sept. 23, 2024, 1:08 a.m.