s4vd: Biclustering via Sparse Singular Value Decomposition Incorporating Stability Selection
Version 1.1-1

The main function s4vd() performs a biclustering via sparse singular value decomposition with a nested stability selection. The results is an biclust object and thus all methods of the biclust package can be applied.

Browse man pages Browse package API and functions Browse package files

AuthorMartin Sill, Sebastian Kaiser
Date of publication2015-11-19 17:15:53
MaintainerMartin Sill <m.sill@dkfz.de>
LicenseGPL-2
Version1.1-1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("s4vd")

Man pages

BCheatmap: Overlap Heatmap for the visualization of overlapping...
BCs4vd: Robust biclustering by sparse singular value decomposition...
BCssvd: Biclustering via sparse singular value decomposition
jaccard: jaccard matrix
lung200: lung
stabpath: Stability paths plot

Functions

BCheatmap Man page Source code
BCs4vd Man page Source code
BCs4vd-class Man page
BCssvd Man page Source code
BCssvd-class Man page
OverlapHeat Man page
\S4method{biclust}{matrix,BCs4vd} Man page
\S4method{biclust}{matrix,BCssvd} Man page
adaLasso Source code
adaLasso.nc Source code
adaLassoSteps Source code
adaLassoSteps.nc Source code
jaccardmat Man page Source code
lung cancer microarray data set200 Man page
lung200 Man page
maPalette Source code
s4vd Man page Man page Source code
ssvd Man page Source code
ssvdBC Source code
stabilitypath Man page
stabpath Man page Source code
thresh Source code
updateu Source code
updateu.pw Source code
updatev Source code
updatev.pw Source code

Files

NAMESPACE
data
data/lung200.RData
R
R/ssvdBC.R
R/stabpathplot.R
R/aaa-s4vd.R
R/ssvd.R
R/jaccard.R
R/thred.R
R/s4vd.R
R/heatmap.r
R/spca.R
MD5
DESCRIPTION
man
man/BCheatmap.Rd
man/stabpath.Rd
man/jaccard.Rd
man/lung200.Rd
man/BCs4vd.Rd
man/BCssvd.Rd
s4vd documentation built on May 29, 2017, 12:04 p.m.