add_locations | Adds location data to a SAFE data worksheet. |
add_taxa | Add a taxonomic hierarchy to a SAFE data worksheet. |
download_gazetteer | Downloads the current SAFE gazetteer |
download_index | Downloads the current dataset index |
download_location_aliases | Downloads the current SAFE location aliases |
download_safe_files | Download SAFE dataset files |
fetch_record_metadata | Get and load SAFE dataset metadata |
file_status | Get file status for a dataset |
get_data_dir | Checks the data directory is set and returns it |
get_file_details | Get file details for a record |
get_index | Get the cached dataset index |
get_locations | Obtaining locations for a SAFE dataset. |
get_taxa | Obtaining taxonomy for a SAFE dataset. |
get_taxon_coverage | Retrieve the current taxon index |
get_taxon_graph | Get a graph of the taxa in a dataset |
igraph_to_phylo | Getting a phylogeny for a dataset |
insert_dataset | Inserts local copies of files from a dataset into a SAFE data... |
load_gazetteer | Load and cache the SAFE gazetteer |
load_index | Load and cache the dataset index |
load_location_aliases | Load and cache the SAFE location aliases |
load_safe_data | Loads data from a SAFE dataset. |
safe_api_search | Internal SAFE dataset API search functions |
safedata | Finding and using data from the SAFE Project. |
safedata_env | Index file memory cache |
safedata_network | Network resources and the safedata package. |
search_safe | SAFE dataset search functions. |
set_example_safe_dir | Functions to use an example data directory for package... |
set_safe_dir | Set the local SAFE data directory |
show_concepts | Show SAFE dataset metadata |
taxon_index_to_taxon_table | Add taxon hierarchy to taxon metadata |
try_to_download | Attempt to download a URL resource, failing gracefully. |
validate_record_ids | Validates dataset record ids from user input |
verbose_message | Message function that can be globally muted |
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