samr: SAM: Significance Analysis of Microarrays

Share:

Significance Analysis of Microarrays

Author
R. Tibshirani, G. Chu, Balasubramanian Narasimhan, Jun Li
Date of publication
2011-06-29 09:42:31
Maintainer
Rob Tibshirani <tibs@stanford.edu>
License
LGPL
Version
2.0
URLs

View on CRAN

Man pages

SAM
Significance analysis of microarrays - simple user interface
samr
Significance analysis of microarrays
samr.assess.samplesize
Assess the sample size for a SAM analysis
samr.assess.samplesize.plot
Make a plot of the results from samr.assess.samplesize
samr.compute.delta.table
Compute delta table for SAM analysis
samr.compute.siggenes.table
Compute significant genes table
samr.estimate.depth
estimate the sequencing depth
samr.internal
Internal samr functions
samr.missrate
Estimate the miss rate table for a SAM analysis
samr.norm.data
output normalized sequencing data
samr.plot
Make Q-Q plot for SAM analysis
samr.pvalues.from.perms
Report estimated p-values for each gene, from a SAM analysis
samr.tail.strength
Estimate tail strength for a dataset, from a SAM analysis
SAMseq
Significance analysis of sequencing data - simple user...

Files in this package

samr
samr/src
samr/src/rankcol.f
samr/DESCRIPTION
samr/man
samr/man/samr.assess.samplesize.plot.Rd
samr/man/samr.missrate.Rd
samr/man/samr.estimate.depth.Rd
samr/man/samr.compute.delta.table.Rd
samr/man/samr.tail.strength.Rd
samr/man/samr.plot.Rd
samr/man/samr.Rd
samr/man/samr.norm.data.Rd
samr/man/SAMseq.Rd
samr/man/samr.compute.siggenes.table.Rd
samr/man/samr.internal.Rd
samr/man/SAM.Rd
samr/man/samr.assess.samplesize.Rd
samr/man/samr.pvalues.from.perms.Rd
samr/R
samr/R/samr.R
samr/R/samr.xlfuncs.R
samr/R/SAM.R
samr/R/SAMseq.R
samr/R/samr.morefuns.R
samr/NAMESPACE