lweights_gaussian: Computation of the log-weight matrix in a gaussian setting.

In saturnin: Spanning Trees Used for Network Inference

Description

The function computes the log-weights of all edges in a gaussian setting. The result should be used in edge.prob with argument log set to TRUE. Usual values are used as default for the prior normal-Wishart hyperparameters. Computation can be parallelized by setting nbcores to more than 2. Parallelization relies on parallel.

Usage

lweights_gaussian(data, 
      a = ncol(data), 
      mu = numeric(p), 
      au = 1, 
      T = diag(ncol(data), 
      ncol(data)), 
      nbcores = 1)

Arguments

data	Matrix containing continuous data.
a	Prior degree of freedom of the normal-Wishart distribution.
mu	Prior mean for the mean of the normal-Wishart distribution.
au	Prior relative precision of the normal-Wishart distribution.
T	Prior scale matrix of the normal-Wishart distribution.
nbcores	Number of cores to be used in parallelized computation.

Value

W	log-weight matrix

Author(s)

Lo<c3><af>c Schwaller

References

This package implements the method described in the paper "Bayesian Inference of Graphical Model Structures Using Trees" by L. Schwaller, S. Robin, M. Stumpf, 2015 (submitted and availavable on arXiv).

Examples

library('saturnin')
data(data_gaussian)

W <- lweights_gaussian(data_gaussian)

prob <- edge.prob(W, log = TRUE)

saturnin documentation built on May 1, 2019, 10:18 p.m.