sbioPN-package: Simulation of deterministic and stochastic biochemical...
In sbioPN: sbioPN: Simulation of deterministic and stochastic spatial biochemical reaction networks using Petri Nets
Description
sbioPN is a package of C functions that can be used to simulate
time-dependent evolution of biochemical reaction networks with spatial
effects. The model
is defined as a place/transition Petri Net, which is close to how
biochemical reactions are defined. The model can be either
deterministically solved using an explicit Runge Kutta Dormand Prince
45 method, simulated using two highly optimized variants of the
stochastic simulation algorithm, or as a deterministic/stochastic
hybrid, according to the Haseltine and Rawlings' algorithm. The library has been optimized for
speed and flexibility.
bioPN has been tested only on 64 bits machines, relying on integers of
64 bits. The behavior on 32 bits architectures is untested and not supported.
Details
Package: sbioPN
Type: Package
Version: 1.1.0
Date: 2014-03-15
License: GPL (>=2)
Author(s)
Roberto Bertolusso and Marek Kimmel
Maintainer: Roberto Bertolusso <rbertolusso@rice.edu>
sbioPN documentation built on May 1, 2019, 8:47 p.m.
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Description
sbioPN is a package of C functions that can be used to simulate time-dependent evolution of biochemical reaction networks with spatial effects. The model is defined as a place/transition Petri Net, which is close to how biochemical reactions are defined. The model can be either deterministically solved using an explicit Runge Kutta Dormand Prince 45 method, simulated using two highly optimized variants of the stochastic simulation algorithm, or as a deterministic/stochastic hybrid, according to the Haseltine and Rawlings' algorithm. The library has been optimized for speed and flexibility.
bioPN has been tested only on 64 bits machines, relying on integers of 64 bits. The behavior on 32 bits architectures is untested and not supported.
Details
| Package: | sbioPN |
| Type: | Package |
| Version: | 1.1.0 |
| Date: | 2014-03-15 |
| License: | GPL (>=2) |
Author(s)
Roberto Bertolusso and Marek Kimmel
Maintainer: Roberto Bertolusso <rbertolusso@rice.edu>
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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