eva_cal: eva_cal

In scAnnotate: An Automated Cell Type Annotation Tool for Single-Cell RNA-Sequencing Data

eva_cal

Description

calculate the F1 score of each cell population, mean of F1 score and overall accuracy

Usage

eva_cal(prediction, cell_label)

Arguments

prediction	A vector of annotate cell type labels
cell_label	A vector of original cell type labels

Value

A matrix contain the F1 score of each cell population, mean of F1 score and overall accuracy

Examples

data(predict_label)
data(pbmc2)
eva_cal(prediction = predict_label,cell_label = pbmc2[,1])

scAnnotate documentation built on May 29, 2024, 6:30 a.m.