find_specific_marker: find_specific_marker
In scCAN: Single-Cell Clustering using Autoencoder and Network Fusion
find_specific_marker R Documentation
find_specific_marker
Description
Calculate cluster and cell type similarity based on the markers.
Usage
find_specific_marker(gene_name, f_list, type = "jacc")
Arguments
gene_name
A list of markers belong to the cluster.
f_list
A list of markers belongs to a reference cell type.
type
A parameter to select the method to measure cluster and cell type
similarity
jacc - Jaccard index.
ac - Accuracy.
f1 - F1 score.
.
Value
A vector of probabilties of a cluster belongs to cell types.
scCAN documentation built on June 24, 2024, 5:19 p.m.
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| find_specific_marker | R Documentation |
find_specific_marker
Description
Calculate cluster and cell type similarity based on the markers.
Usage
find_specific_marker(gene_name, f_list, type = "jacc")
Arguments
gene_name |
A list of markers belong to the cluster. |
f_list |
A list of markers belongs to a reference cell type. |
type |
A parameter to select the method to measure cluster and cell type similarity
. |
Value
A vector of probabilties of a cluster belongs to cell types.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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