Man pages for scGOclust
Measuring Cell Type Similarity with Gene Ontology in Single-Cell RNA-Seq
| analyzeGOSeurat | standard seurat analysis on GO_seurat object |
| cellTypeGOCorr | calculate correlation between cell types represented by... |
| crossSpeciesCellTypeGOCorr | calculate cross-species correlation between cell types... |
| dme_subset | Drosophila gut scRNA-seq data, 10X Chromium Subset to 45... |
| dme_tbl | Drosophila EMSEMBL gene and GO annotation, subset to genes... |
| ensemblToGo | get requested ensembl ID to GO mapping table |
| getCellTypeGO | get per cell type average scaled vector of GO terms |
| getCellTypeSharedGO | get shared up and down regulated GO terms for all pairs of... |
| getCellTypeSharedTerms | query co-up and co-down regulated GO terms from certain cell... |
| globalvariables | record some global variables: pre-defined column name in... |
| makeGOSeurat | create a seurat object with GO terms |
| mmu_subset | Mouse stomach and intestine scRNA-seq data, microwell-seq... |
| mmu_tbl | Mouse EMSEMBL gene and GO annotation, subset to genes present... |
| plotCellTypeCorrHeatmap | plot clustered heatmap for cell type corr |
| plotCellTypeSankey | plot Sankey diagram for cell type links above a certain... |
