makeGOSeurat | R Documentation |
create a seurat object with GO terms
makeGOSeurat(ensembl_to_GO, seurat_obj, feature_type = "ensembl_gene_id")
ensembl_to_GO |
ensembl_to_go mapping table from function ensemblToGo |
seurat_obj |
count matrix with genes to cells |
feature_type |
feature type of count matrix, choose from ensembl_gene_id, external_gene_name, default ensembl_gene_id |
a seurat object with GO terms as features
library(scGOclust)
library(httr)
httr::set_config(httr::config(ssl_verifypeer = FALSE))
data(mmu_tbl)
data(mmu_subset)
makeGOSeurat(ensembl_to_GO = mmu_tbl,
seurat_obj = mmu_subset,
feature_type = "external_gene_name")
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