scINSIGHT: Interpretation of Heterogeneous Single-Cell Gene Expression Data

We develop a novel matrix factorization tool named 'scINSIGHT' to jointly analyze multiple single-cell gene expression samples from biologically heterogeneous sources, such as different disease phases, treatment groups, or developmental stages. Given multiple gene expression samples from different biological conditions, 'scINSIGHT' simultaneously identifies common and condition-specific gene pathways and quantify their expression levels in each sample in a lower-dimensional space. With the factorized results, the inferred expression levels and memberships of common gene pathways can be used to cluster cells and detect cell identities, and the condition-specific gene pathways can help compare functional differences in transcriptomes from distinct conditions.

Getting started

Package details

AuthorKun Qian [aut, ctb, cre] (<https://orcid.org/0000-0002-2354-2238>), Wei Vivian Li [aut, ctb] (<https://orcid.org/0000-0002-2087-2709>)
MaintainerKun Qian <Kun_Qian@foxmail.com>
LicenseGPL-3
Version0.1.1
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("scINSIGHT")

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scINSIGHT documentation built on Sept. 6, 2021, 9:10 a.m.